Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    25   5.2  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   6.8  
SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.8  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   9.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   9.0  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   9.0  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 373 IVQLSSETPIVLKIQSFSESFYFVVLVIIKLCNKYC 480
           +  +S   PI  K  +     Y  VL + K C KYC
Sbjct: 326 VTDISRTWPINGKFSTVQRDLYQAVLNVQKKCIKYC 361


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 184 PVFTMPSVRHMSI 146
           PVFTMPS+ H +I
Sbjct: 102 PVFTMPSIEHNTI 114


>SPBC1539.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 102 FRFFF-VFGNLNRYFSKVIYLFFLRRNYL*NNRF 4
           FR FF VF   N     V Y+FFLR  Y  N+ F
Sbjct: 184 FRLFFGVFLRKNSISRLVGYIFFLRMRYT-NSHF 216


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 222 RELRQDHPVKLHCLSLQ 172
           REL QD P+  H LS+Q
Sbjct: 298 RELTQDFPIYAHYLSIQ 314


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 276 YRCLHPYRL*LAISFFLE 223
           Y+ L+P+RL L +S+++E
Sbjct: 448 YKSLYPFRLSLFVSYYME 465


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 391 ETPIVLKIQSFSESFYFVVLVIIKLCNKY 477
           +T ++L+ Q    +F F+V+++  +C+ Y
Sbjct: 106 KTYVILQCQHVVANFKFIVIILHAMCSVY 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,723
Number of Sequences: 5004
Number of extensions: 36064
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)