Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     29   1.8  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_2152| Best HMM Match : EGF (HMM E-Value=0)                          28   5.4  
SB_16101| Best HMM Match : RVT_1 (HMM E-Value=0.00031)                 27   9.4  

>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 189  HCLSLQCHQ*DTCLFSLNNHLLCC 118
            HC    CH+  TC+ SLN H+  C
Sbjct: 1902 HCNPNSCHEQATCIGSLNGHVCEC 1925


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 186 CLSLQCHQ*DTCLFSLNNHLLCC 118
           C S  CH   TCL  +NN+   C
Sbjct: 216 CASAPCHSYSTCLDGVNNYTCLC 238


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 186 CLSLQCHQ*DTCLFSLNNHLLCC 118
           C S  CH   TCL  +NN+   C
Sbjct: 441 CASAPCHSYSTCLDGVNNYTCLC 463


>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 410 FKTMGVSDDSCTIPSFIHC 354
           F + GV DDSC+ P+ I C
Sbjct: 915 FSSKGVEDDSCSSPNCIRC 933


>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1603

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 186 CLSLQCHQ*DTCLFSLNNHLLCC 118
           C S  CH   TCL  +NN+   C
Sbjct: 18  CASAPCHSYSTCLDGVNNYTCLC 40


>SB_16101| Best HMM Match : RVT_1 (HMM E-Value=0.00031)
          Length = 336

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 228 LERELRQDHPVKLHCLSLQCHQ*DTCLFSLNNHLLCCFDCGTFRFFFVFGNLNRYFSKVI 49
           L R+  QD+       SL+ H  +T L  + N +LC  D G      +  +L+  F  V 
Sbjct: 142 LYRQTEQDNWEISAFRSLKFHSTETALIKVQNDILCAIDGGNSVLMLLL-DLSAAFDTVD 200

Query: 48  YLFFLRR 28
           +   L R
Sbjct: 201 HSILLSR 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,724
Number of Sequences: 59808
Number of extensions: 262351
Number of successful extensions: 511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)