Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A06f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1997|AAF48340.1|   74|Drosophila melanogaster CG12479-P...    31   0.72 
AY071755-1|AAL49377.1|   72|Drosophila melanogaster RH61753p pro...    30   1.7  

>AE014298-1997|AAF48340.1|   74|Drosophila melanogaster CG12479-PA
           protein.
          Length = 74

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/60 (28%), Positives = 21/60 (35%)
 Frame = +3

Query: 129 DDYSAKIDMCLTDGIVKTXXXXXXXXXXXXXFLKRRRWPXXXXXXXXXXXXXXNCEHELN 308
           D     I+ CL+D +VK              F +RR WP               CE ELN
Sbjct: 7   DRLRENINRCLSDSLVKGVGGLVIGSVVTLLFFRRRIWPVWLGTGFGVGVAYRGCEKELN 66


>AY071755-1|AAL49377.1|   72|Drosophila melanogaster RH61753p
           protein.
          Length = 72

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/69 (23%), Positives = 25/69 (36%)
 Frame = +3

Query: 102 MSRSQNNTTDDYSAKIDMCLTDGIVKTXXXXXXXXXXXXXFLKRRRWPXXXXXXXXXXXX 281
           M+   N   +    ++D C++D ++K               LKRR WP            
Sbjct: 1   MTSRDNIFEEKICNRLDHCVSDVLIKGCGGVIIGSAVSFLILKRRAWPVWLGAGFGMGIA 60

Query: 282 XXNCEHELN 308
              CE +LN
Sbjct: 61  YRTCEKDLN 69


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,258
Number of Sequences: 53049
Number of extensions: 364528
Number of successful extensions: 828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)