Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical ...    34   0.071
Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    29   1.5  
U88182-4|AAB42307.1|  113|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>AC024136-2|AAF35960.2|  105|Caenorhabditis elegans Hypothetical
           protein F54A3.5 protein.
          Length = 105

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = +3

Query: 117 NNTTDDYSAKIDMCLTDGIVKTXXXXXXXXXXXXXFLKRRRWPXXXXXXXXXXXXXXNCE 296
           + + D+   KID C  D ++K              F K R WP              NC 
Sbjct: 11  SRSEDEVGQKIDRCFADSLLKVTGGVAIGIVASVAFFKSRSWPIWFGSGVGLGTGWSNCR 70

Query: 297 HE 302
           H+
Sbjct: 71  HD 72


>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -1

Query: 470 LHNLIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIH 357
           LH L I K      SLN     T  +S  SC +PSF H
Sbjct: 55  LHTLDINKLMSSISSLNTATKITPHISSSSCFLPSFSH 92


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = -1

Query: 461 LIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIHCFFLVLTY*ILCSICLI*FMFTVCI 282
           L+I K  K  +  N  IF+ +   D      +FI  F       +LCS+CL+ F+F V  
Sbjct: 34  LVILKNDKLIEFYNIGIFQWLRDQDSVYLYSNFIVSFL------VLCSVCLLIFVFDVAT 87

Query: 281 SDTDAYTH 258
           S      H
Sbjct: 88  SQESEAFH 95


>U88182-4|AAB42307.1|  113|Caenorhabditis elegans Hypothetical
           protein C53C11.2 protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = -1

Query: 473 LLHNLIITKTTK*NDSLNDCIFKTMGVSDDSCTIPSFIHCFFLVLTY*ILCSICL 309
           LL  +++ KTT+ N+S +D + + MG++   C I + I     +L   IL  +C+
Sbjct: 2   LLDEMLLPKTTQQNESCDDPMVQFMGINMGICLILTAIVAIAAILGC-ILLLLCV 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,511
Number of Sequences: 27780
Number of extensions: 207623
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)