Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30470.1 68415.m03711 transcriptional factor B3 family protei...    30   0.82 
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    29   2.5  
At3g18040.2 68416.m02295 mitogen-activated protein kinase, putat...    28   3.3  
At3g18040.1 68416.m02294 mitogen-activated protein kinase, putat...    28   3.3  
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ...    28   4.4  

>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
           low similarity to FUSCA3 [Arabidopsis thaliana]
           GI:3582518; contains Pfam profile PF02362: B3 DNA
           binding domain
          Length = 790

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 155 VSY*WHCKDRQWSFTGWSCLSSLSKKKEMANHSRYGCRHRYR 280
           +S+ W C D  W  +  SC +     KE+ N  + G  H+ R
Sbjct: 562 LSFKWTCIDNVWDVSRCSCSAPEESLKELENVLKVGREHKKR 603


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 167 WHCKDRQWSFTGWSCLSSLSKKKEM 241
           W   D Q+S TGW CLSSL +   M
Sbjct: 444 WKASD-QFSGTGWFCLSSLGESPTM 467


>At3g18040.2 68416.m02295 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
           thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to blast
           and wounding induced mitogen-activated protein kinase
           (BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 422

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  STCLGFRIQKKNEMSRSQNNTTDDYSAKI 149
           S C+G + + K+E   S N+T D  S K+
Sbjct: 389 SKCIGMKPRNKSEYGESNNDTVDALSQKV 417


>At3g18040.1 68416.m02294 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK9) identical to ATMPK9 [Arabidopsis
           thaliana] gi|7106544|dbj|BAA92223; mitogen-activated
           protein kinase (MAPK), PMID:12119167; similar to blast
           and wounding induced mitogen-activated protein kinase
           (BWMK1) GB:AAD52659 [Oryza sativa]; contains Pfam
           profile: PF00069 Eukaryotic protein kinase domain
          Length = 510

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 63  STCLGFRIQKKNEMSRSQNNTTDDYSAKI 149
           S C+G + + K+E   S N+T D  S K+
Sbjct: 477 SKCIGMKPRNKSEYGESNNDTVDALSQKV 505


>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 391

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 203 WSCLSSLSKKKEMANHS 253
           WSCLSS+ KKKE+  ++
Sbjct: 370 WSCLSSMIKKKEVVGNT 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,608,087
Number of Sequences: 28952
Number of extensions: 178613
Number of successful extensions: 367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)