Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...   111   3e-25
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...   110   6e-25
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...   110   6e-25
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi...    33   0.12 
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    32   0.20 
At3g10440.1 68416.m01252 hypothetical protein                          31   0.47 
At5g08320.1 68418.m00979 expressed protein predicted proteins, H...    31   0.62 
At3g57070.1 68416.m06354 glutaredoxin family protein contains Pf...    28   3.3  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    28   3.3  
At3g08670.1 68416.m01007 expressed protein                             27   5.8  
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    27   5.8  

>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score =  111 bits (267), Expect = 3e-25
 Identities = 68/142 (47%), Positives = 81/142 (57%)
 Frame = -1

Query: 440 AGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFN 261
           AGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+
Sbjct: 99  AGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FD 157

Query: 260 DDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 81
           D YF              EG+   A K+EK    +++K DQKTVD A+IK+I A P+ KV
Sbjct: 158 DKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV 214

Query: 80  LRGYLKAAFGLRSSQYPHRLRF 15
              YL A F L     PH L F
Sbjct: 215 ---YLGARFSLSQGMKPHELVF 233


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  110 bits (264), Expect = 6e-25
 Identities = 67/142 (47%), Positives = 81/142 (57%)
 Frame = -1

Query: 440 AGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFN 261
           AGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+
Sbjct: 99  AGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FD 157

Query: 260 DDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 81
           D YF              EG+   A K+EK    + +K DQK VD A+IKAI A P+   
Sbjct: 158 DKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE--- 211

Query: 80  LRGYLKAAFGLRSSQYPHRLRF 15
           L+ YL A F L+    PH L F
Sbjct: 212 LKTYLGARFSLKQGMKPHELVF 233


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score =  110 bits (264), Expect = 6e-25
 Identities = 67/142 (47%), Positives = 81/142 (57%)
 Frame = -1

Query: 440 AGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFN 261
           AGR  GKRVV +  L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+
Sbjct: 99  AGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FD 157

Query: 260 DDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKV 81
           D YF              EG+   A K+EK    + +K DQK VD A+IKAI A P+   
Sbjct: 158 DKYF---GKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE--- 211

Query: 80  LRGYLKAAFGLRSSQYPHRLRF 15
           L+ YL A F L+    PH L F
Sbjct: 212 LKTYLGARFSLKQGMKPHELVF 233


>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 530

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = -2

Query: 238 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSTRL*SKPSEPDPTRRCSADT 68
           R+  N+ S +   +T+   LP+K  +T    S++P +  S +   KP   +   R S+++
Sbjct: 41  RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96

Query: 67  SKRPSDSARANIPIG 23
           +++ SDSAR +I  G
Sbjct: 97  ARKSSDSARKSISSG 111


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = -1

Query: 188  ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRL 21
            ATK  K  P+  RK  ++TV    + AIG  P+KKV R    + F  +SS    RL
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSSSVMSRL 1407


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = -2

Query: 292 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 131
           S++S  +  S   T +++  A  ++ +A+  +T        Q+   +  L  ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315

Query: 130 STRL*SKPSEPDPTRRCSADTSKRPSDSARA 38
           S RL S+  EP  +   S +T+KR   + R+
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIRS 346


>At5g08320.1 68418.m00979 expressed protein predicted proteins, Homo
           sapiens and Caenorhabditis elegans
          Length = 150

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 309 GADHIALRNTA*RARIESKRSSN*KQTAGQNSNKYNPLACMSTSXEXG 452
           G D +  +NT      + +R S  ++T  ++S K NP+ C + S E G
Sbjct: 85  GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTEIG 132


>At3g57070.1 68416.m06354 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 417

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 117 DQSHRSPTRQEGAPRIPQSGLRTPLEPISPSAAL 16
           D S  S + Q+  PRI  SG  TP +P+SP + +
Sbjct: 78  DGSKNSSSDQQTLPRISISGKNTP-DPVSPDSVI 110


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -2

Query: 286 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSTRL*SKP 107
           T   ++TS ++    + SASN +   +     + QKK N F ++ AK  + +  R  SKP
Sbjct: 40  TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94

Query: 106 SEPDPTR 86
             PDP R
Sbjct: 95  --PDPRR 99


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 79  STFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSPS 207
           S+F SGR+P +++  SS    S +R S  +  S   A+ S+P+
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPT 210


>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
            similar to BEIGE (GI:3928547) [Rattus norvegicus];
            Similar to gb|U70015 lysosomal trafficking regulator from
            Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
            repeats. ESTs gb|T43386 and gb|AA395236 come from this
            gene
          Length = 3601

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -2

Query: 316  SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIR 137
            S PP   +S     Q  + + T  +   AS    ++K  MTS  Q ++N F + S   + 
Sbjct: 1082 SWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTRMTSAQQHEQNIFRMFSVGAVS 1141

Query: 136  RQS 128
             +S
Sbjct: 1142 NES 1144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,714,038
Number of Sequences: 28952
Number of extensions: 231092
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)