Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    32   0.20 
At2g36720.1 68415.m04505 PHD finger transcription factor, putative     30   1.1  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   2.5  
At2g46550.1 68415.m05807 expressed protein                             28   3.3  
At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR ...    28   4.4  
At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR ...    28   4.4  
At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical ...    27   7.7  
At3g24630.1 68416.m03093 hypothetical protein                          27   7.7  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
 Frame = +1

Query: 211 RNLDWESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSAPV 357
           RNL  + KA LP   RR             P  ASP TSP  K   S PSS    +S  V
Sbjct: 68  RNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSLVV 127

Query: 358 KITP 369
             TP
Sbjct: 128 STTP 131


>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
          Length = 1007

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +1

Query: 166 DFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESV 345
           D+  ++K+  C   K    + S        + CS    S ++    +TS S P+     V
Sbjct: 365 DYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEVETSQASLAATRTSTSAPACITSPV 424

Query: 346 SAPVKIT 366
            + +KIT
Sbjct: 425 KSRLKIT 431


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 220 DWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPE 372
           D E +AQ   K+      + +  + P  +   +KP+  G+ + A VK TPE
Sbjct: 618 DEEEEAQPVVKKELKDAISKAHDSEPEAEKPTAKPAGTGKPLIAAVKATPE 668


>At2g46550.1 68415.m05807 expressed protein
          Length = 397

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +1

Query: 181 KKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPS--TSPGLKT-SESKPSSFGESVSA 351
           K ++A    +R+LD+     LPT ++    +  SP    S GL+  S S  +  G S  +
Sbjct: 188 KDELASLVAQRSLDYVENCDLPTPQKMKRSYYGSPRGFDSDGLRDYSVSGQTIKGTSKGS 247

Query: 352 PVKITPERMAQEIYDEIKRLH--RRGQLR 432
             K  PE  ++    + + L   RR Q R
Sbjct: 248 SCKNRPEASSESDLSKSELLEALRRSQTR 276


>At5g43740.2 68418.m05348 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 190 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 306
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g43740.1 68418.m05347 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 862

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 190 MACATLKRNLDWESKAQLPTKRRRCSPFAASPST-SPGLK 306
           + C   +  +DWESK     +RR  SP    PST SPG K
Sbjct: 711 LMCNISEIRIDWESK-----ERRELSPTEILPSTGSPGFK 745


>At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical to
           NADH-cytochrome b5 reductase [Arabidopsis thaliana]
           GI:4240116
          Length = 281

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -1

Query: 206 NVAHAIFFLRPTKSS--GLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQVTVK 39
           NVA  +F L PT +S  GL I Q I    +  + ++ IKP+T  T      RF++ +K
Sbjct: 61  NVAKFVFEL-PTSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPTTLDSDVGRFELVIK 117


>At3g24630.1 68416.m03093 hypothetical protein
          Length = 724

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/94 (21%), Positives = 41/94 (43%)
 Frame = +1

Query: 151 IRKPEDFVGRKKKMACATLKRNLDWESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSS 330
           + +PED + +        L+ +L   S  Q    +R+  P   +   S  L+   S    
Sbjct: 103 VSRPED-IAKDLLRGALDLEESLAMLSSIQEDDSKRK--PMIRNDGRSD-LRFQRSMSDR 158

Query: 331 FGESVSAPVKITPERMAQEIYDEIKRLHRRGQLR 432
           FGE +   + +     +++ Y+E++++ R   LR
Sbjct: 159 FGERIEKRMMVQENVASKDCYEELRKVIRESFLR 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,331,690
Number of Sequences: 28952
Number of extensions: 227295
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)