Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A02f
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    29   0.41 
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   1.6  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   3.8  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   3.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   3.8  
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom...    25   5.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   6.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.7  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   6.7  

>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 320 TEMFPECVRNGTYTVTTNTWS-GIKGLYGLSRSVMW 424
           T M PE +R G YTV ++ WS GI  +   ++ + W
Sbjct: 224 TYMSPERIRGGKYTVKSDIWSLGISIIELATQELPW 259


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 382 RPCICCNCVCAIP 344
           RPCICCN V   P
Sbjct: 81  RPCICCNSVLRYP 93


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 249 LLVDL*KSTTMNQMKLFLKDCG 314
           L+ +L    + N++K+F KDCG
Sbjct: 593 LVTNLPSDISENELKIFFKDCG 614


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 326 MFPECVRNGTYTVTTNTWS 382
           M PE +  G+YT++++ WS
Sbjct: 246 MAPERISGGSYTISSDIWS 264


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 320 SDPTIFQKEFHLVHRRTLSKVH*EIQQWAMTPPRGL*NIVQAFFQGYHLC 171
           SD T+ Q++   +++  L+ V    Q+W    P  +  IVQA      LC
Sbjct: 103 SDETVLQQQKTFLNKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLC 152


>SPBC14F5.08 |med7||mediator complex subunit
           Med7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +2

Query: 302 ERLWGLTEMF--PECVRNGTYTVTTNTW 379
           E +  L ++F  P C+ +GTY +  +TW
Sbjct: 54  EEIESLAKLFKKPSCLTSGTYQMFGDTW 81


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 287 DETLSER-LWGLTEMFPECVRNGT-YTVT-TNTWSGIKGLYGLS 409
           DET SE+ +  L   F   V N   Y +T  NTW G+  + GLS
Sbjct: 435 DETSSEQCIQKLEAAFARFVDNQQIYPLTYDNTWKGVVSVAGLS 478


>SPCC1322.12c |bub1||serine/threonine protein kinase
            Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 341  HTLGTFRSDPTIFQKEFHLVHRRTLSKVH*EIQQWAMTPPRG 216
            H L     +PT+   E +L     LSK+  E+++W +    G
Sbjct: 987  HRLFDLLLNPTLHVSEENLPMTEELSKIRIEMEEWLVNHSTG 1028


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 373 ICCNCVCAIPYTLWEHFGQTPQSFRKSFIWF 281
           +C N   A  +  WE F  TPQ      +W+
Sbjct: 213 VCDNTANAKTHKSWELFENTPQLPAAKMMWY 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,537
Number of Sequences: 5004
Number of extensions: 33772
Number of successful extensions: 77
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)