Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A02f
         (436 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0110 - 13539059-13539751,13539857-13540383,13541925-135424...    27   6.6  
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771...    27   6.6  

>11_04_0110 -
           13539059-13539751,13539857-13540383,13541925-13542437,
           13542606-13542786
          Length = 637

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 116 DLTDELELSDSGMESLTTSKDDTP 187
           DL DEL   DSG+ S  +S  DTP
Sbjct: 90  DLIDELCRRDSGLLSAASSSGDTP 113


>11_02_0047 +
           7716315-7716420,7716518-7716647,7716785-7716856,
           7717007-7717078,7717274-7717345,7717684-7717845,
           7718105-7718176,7718435-7718503,7718788-7718859,
           7718992-7719129,7719386-7719888,7720007-7720171,
           7720267-7720403,7720488-7720707,7720793-7721028,
           7721165-7721632
          Length = 897

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 364 NCVCAIPYTLWEHFGQTPQSFRKSFIWFIVVL 269
           NC CA+PY    HF ++P  F  S   F V+L
Sbjct: 374 NCTCAVPYMGTLHF-RSPPFFDLSNDTFFVLL 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,101
Number of Sequences: 37544
Number of extensions: 199415
Number of successful extensions: 393
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)