Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS305A02f
(436 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14) 43 9e-05
SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.23
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 29 1.7
SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09) 27 5.0
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_57359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_41108| Best HMM Match : Troponin (HMM E-Value=6) 27 8.8
SB_2731| Best HMM Match : Steroid_dh (HMM E-Value=2.8) 27 8.8
SB_42830| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_33485| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_23370| Best HMM Match : Sulfate_transp (HMM E-Value=7.2) 27 8.8
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_12735| Best HMM Match : PT (HMM E-Value=0.36) 27 8.8
>SB_3761| Best HMM Match : Tom22 (HMM E-Value=0.14)
Length = 109
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +2
Query: 278 DEPDETLSERLWGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMW 424
D+ ET+ ER+ L+EMFP+ VRN T SG K LY + +W
Sbjct: 3 DDISETIGERIMALSEMFPDSVRNVASATGGYTVSGAKWLYNFTGKTIW 51
>SB_2924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 31.9 bits (69), Expect = 0.23
Identities = 8/26 (30%), Positives = 19/26 (73%)
Frame = -2
Query: 384 PDHVFVVTVYVPFLTHSGNISVRPHN 307
P H ++ +++PF++ S +++ RPH+
Sbjct: 40 PHHFVIIIIFIPFISSSSSLTYRPHH 65
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 405 RPYRPLIPDHVFVVTVYVPFLTHSGNISVRPH 310
RP+RP+ P + T P +H G IS+RPH
Sbjct: 21 RPHRPIAPSPLGPTTPSPP--SHHGPISLRPH 50
>SB_38846| Best HMM Match : Cache (HMM E-Value=2.7e-09)
Length = 916
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +2
Query: 275 DDEPDETLSERL----WGLTEMFPECVRNGTYTVTTNTWSGIKGLYGLSRSVMW 424
++E D+T++E + G +E F E +RN Y K GLS+ V+W
Sbjct: 426 NEETDKTVAEYVKYFDGGTSEKFKESIRNTVYVTQMAETIWGKSNTGLSQYVVW 479
>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYMV 381
+G + RVCKEW +N MV
Sbjct: 267 IGGHAEIVRVCKEWGATDFNDAMV 290
>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 978
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 206 IVQAFFQGYHLC-S*SKTPFRYRLILI 129
+++A+ GYHLC S ++ F Y LI+I
Sbjct: 792 LIEAWENGYHLCRSEYRSLFEYELIMI 818
>SB_57359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYM 378
+ R+ VCKEWH + +K+M
Sbjct: 55 LSQSRHGRHVCKEWHKYELDKFM 77
>SB_41108| Best HMM Match : Troponin (HMM E-Value=6)
Length = 151
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYM 378
+ R+ VCKEWH + +K+M
Sbjct: 61 LSQSRHGRHVCKEWHKYELDKFM 83
>SB_2731| Best HMM Match : Steroid_dh (HMM E-Value=2.8)
Length = 231
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYM 378
+ R+ VCKEWH + +K+M
Sbjct: 55 LSQSRHGRHVCKEWHKYELDKFM 77
>SB_42830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +1
Query: 307 IVGSDRNVPRVCKEWHIHSYNKY---MVWYQRP 396
IVG+ R + C E H+H Y K + W RP
Sbjct: 63 IVGATRKLSSRCHENHLHFYEKVKLTLPWEPRP 95
>SB_36304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYM 378
+ R+ VCKEWH + +K+M
Sbjct: 55 LSQSRHGRHVCKEWHKYELDKFM 77
>SB_33485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 310 VGSDRNVPRVCKEWHIHSYNKYM 378
+ R+ VCKEWH + +K+M
Sbjct: 107 LSQSRHGRHVCKEWHKYELDKFM 129
>SB_23370| Best HMM Match : Sulfate_transp (HMM E-Value=7.2)
Length = 332
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 356 YTVTTNTWSGIKGLYGLSRSV 418
Y++ + W+G+ LYG+S SV
Sbjct: 15 YSINSLFWNGLASLYGVSHSV 35
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Frame = +2
Query: 317 LTEMFPECV--------RNGTYTVTTNTWSGIKGLYG 403
LTE+FPE RNG TN + +KG+YG
Sbjct: 161 LTELFPEAFAFIGHKWHRNGIKKPRTNRYPSLKGVYG 197
>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
Length = 1148
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 269 EYDDEPDETLSERLWG 316
E D + DETL E++WG
Sbjct: 396 EVDGQEDETLDEKMWG 411
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,747
Number of Sequences: 59808
Number of extensions: 245334
Number of successful extensions: 469
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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