Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A02f
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF000299-4|AAC47979.1|  195|Caenorhabditis elegans Hypothetical ...    27   7.8  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AF025470-5|AAB71053.1|  109|Caenorhabditis elegans Hypothetical
           protein W10D9.5 protein.
          Length = 109

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 24/57 (42%), Positives = 39/57 (68%), Gaps = 5/57 (8%)
 Frame = +2

Query: 269 EYDDEPD----ETLSERLWGLTEMFPECVRNGTY-TVTTNTWSGIKGLYGLSRSVMW 424
           ++DD PD    ET+ ER+ GL EMFP+ +R+  + TV  + W G+KG++ L++S +W
Sbjct: 7   DFDDIPDSEIHETIVERIEGLGEMFPDALRSAVHSTVDWSIW-GVKGVFSLTKSTIW 62


>Z71262-1|CAA95813.1|  418|Caenorhabditis elegans Hypothetical
           protein F22D6.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +2

Query: 104 NMLMDLTDELELSDSGM--ESLTTSKDDTPERRPEQY 208
           N L+ +TD++++SD G+  +  T   DDT ++ P ++
Sbjct: 274 NCLLSITDQIKISDFGLSDDKRTEMHDDTLDKVPVKW 310


>U58757-3|AAC47921.3|  620|Caenorhabditis elegans Hypothetical
           protein C01B10.10 protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 308 LWGLTEMFPECVRNGTYTVTTNTW 379
           +W  TE  P C+ N T+T +   W
Sbjct: 69  VWNATEYGPACMSNSTWTQSPQKW 92


>AF000299-4|AAC47979.1|  195|Caenorhabditis elegans Hypothetical
           protein E03H12.4 protein.
          Length = 195

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 352 HIHSYNKYMVWYQRPVWSIT 411
           + + YN Y V Y  P+W+I+
Sbjct: 69  YTNGYNNYKVIYSEPIWTIS 88


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
           protein Y76B12C.2 protein.
          Length = 1119

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 DELELSDSGMESLTTSKDDTPERRPE 202
           D+LELS S  E  ++S+D+  E RP+
Sbjct: 230 DQLELSSSSSELESSSEDEDTEIRPK 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,656,311
Number of Sequences: 27780
Number of extensions: 185335
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)