Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS305A02f
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72810.1 68414.m08417 threonine synthase, putative strong sim...    33   0.063
At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family pr...    32   0.19 
At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family pr...    32   0.19 
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera...    28   2.4  
At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesteras...    27   4.1  
At3g25805.1 68416.m03212 expressed protein                             27   7.2  
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.2  
At5g01730.1 68418.m00091 expressed protein                             26   9.5  
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot...    26   9.5  
At4g28090.1 68417.m04030 multi-copper oxidase type I family prot...    26   9.5  
At3g60710.1 68416.m06792 F-box family protein contains F-box dom...    26   9.5  

>At1g72810.1 68414.m08417 threonine synthase, putative strong
           similarity to SP|Q9S7B5 Threonine synthase, chloroplast
           precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana}
          Length = 516

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -3

Query: 269 LSKVH*EIQQWAMTPPRGL*NIVQAFFQGYHLCS*SKTPFRY-RLILIHRSNP*ACYRQY 93
           L + + ++  W + P   L NI  AF++G+H+C       R  RL+    +N    Y  Y
Sbjct: 310 LQQFNWQVPDWVIVPGGNLGNIY-AFYKGFHMCKELGLVDRIPRLVCAQAANANPLYLHY 368

Query: 92  GFNLKNDF 69
               K DF
Sbjct: 369 KSGFKEDF 376


>At2g05810.2 68415.m00627 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 IAEWSL*LRAKMIPLKEGLNNIS*PPRWGHRPLLDLLV 257
           I  W + LR+K+  L   L+++S  P W   PLL  L+
Sbjct: 45  IGRWQI-LRSKLFTLNSSLSSLSESPHWSQNPLLHTLL 81


>At2g05810.1 68415.m00626 armadillo/beta-catenin repeat family
           protein weak similarity to CCLS 65 [Silene latifolia]
           GI:2570102; contains Pfam profile PF00514:
           Armadillo/beta-catenin-like repeat
          Length = 580

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 144 IAEWSL*LRAKMIPLKEGLNNIS*PPRWGHRPLLDLLV 257
           I  W + LR+K+  L   L+++S  P W   PLL  L+
Sbjct: 45  IGRWQI-LRSKLFTLNSSLSSLSESPHWSQNPLLHTLL 81


>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 373 ICCNCVCAIPYTLWEHFGQTPQSFRKSFIWFI 278
           +C   +C +P +  +  G   +  R+SFIW I
Sbjct: 293 VCLGSICNLPLSQLKELGLGLEESRRSFIWVI 324


>At1g08510.1 68414.m00942 acyl-[acyl carrier protein] thioesterase /
           acyl-ACP thioesterase / oleoyl-[acyl-carrier protein]
           hydrolase / S-acyl fatty acid synthase thioesterase
           identical to acyl-(acyl carrier protein) thioesterase
           [Arabidopsis thaliana] GI:804948
          Length = 412

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 337 LWEHFGQTPQSFRKSFIWFI 278
           L + FG TP+ F+K+ IW +
Sbjct: 179 LGDGFGSTPEMFKKNLIWVV 198


>At3g25805.1 68416.m03212 expressed protein
          Length = 335

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/46 (21%), Positives = 25/46 (54%)
 Frame = +2

Query: 65  KKNRFSN*IHIVYNMLMDLTDELELSDSGMESLTTSKDDTPERRPE 202
           K+NR+ + + ++++++M LT+   +    +       DD P +R +
Sbjct: 176 KRNRYKSSLDVLWSLMMFLTNTFLIPYMALRLNDADPDDKPSKRSQ 221


>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 496

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 373 ICCNCVCAIPYTLWEHFGQTPQSFRKSFIWFI 278
           +C   +C +P +  +  G   +  ++SFIW I
Sbjct: 293 VCLGSICNLPLSQLKELGLGLEKSQRSFIWVI 324


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 47   YDNLFTKKNRFSN*IHIVYNMLMDLTDELELSDSGMESLTTSKDDTPERRPE 202
            Y  +FT  N   +   ++   L D  D L +S   +  L+TS  +TP+  PE
Sbjct: 866  YQEIFTSLNDHIS-ESVLSKGLTDEEDFLNVSPESILPLSTSLHETPQANPE 916


>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 541

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 322 RNVPRVCKEWHIHSYNKYMVWYQRPVWSITL 414
           +N  R  + WH+   + Y V Y    W++T+
Sbjct: 429 QNDERSIQSWHMDGTSAYAVGYGSGTWNVTM 459


>At4g28090.1 68417.m04030 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 547

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +1

Query: 292 NSF*KIVGSDRNVPRVCKEWHIHSYNKYMVWYQRPVWS 405
           N+F +I+  +R   ++ + +H+  YN ++V   + +WS
Sbjct: 421 NAFLEIIFQNRE--KIVQSYHLDGYNFWVVGINKGIWS 456


>At3g60710.1 68416.m06792 F-box family protein contains F-box domain
           Pfam:PF00646 ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 320

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 PDETLSERLWGLTEMFPECVRNGTY-TVTTNTWSGIKGLYGLSRSVM 421
           P+E L E L  L     E VR     T   N W  + GLY +SR ++
Sbjct: 9   PNELLQEILLNLPTS--ESVRTSVLPTRWRNLWQSVPGLYLISRQIL 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,050,779
Number of Sequences: 28952
Number of extensions: 170778
Number of successful extensions: 399
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)