Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    29   0.32 
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    25   5.2  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    25   5.2  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   9.0  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    25   9.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -3

Query: 432 TFAPN--FFDISLIDVFRKKNHK*F-PIAY*FSNIILHCFNLGCVITSSNCIVRRQPQ 268
           T+ PN    +++L D   ++ +    P++Y  SN+IL CF++ C  + +N   +  P+
Sbjct: 56  TYGPNSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE 113


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 285 VRRQPQDVR-LRRVQQDIASATVGS 214
           VRRQ  DV  LRRV Q +A  T+G+
Sbjct: 133 VRRQAVDVSPLRRVNQALALITIGA 157


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 285 VRRQPQDVR-LRRVQQDIASATVGS 214
           VRRQ  DV  LRRV Q +A  T+G+
Sbjct: 133 VRRQAVDVSPLRRVNQALALITIGA 157


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 375 GFFFEKHRSTKYRKNLEQKFIKCNFMSKIYFCNY 476
           GFF++   S      LEQ    C  M ++YF ++
Sbjct: 350 GFFWDSIDSKIRTMCLEQSLSACAIMKRVYFRHF 383


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 270 QDVRLRRVQQDIASATVGSTSYNNYATP 187
           +D+R       I S    ST+ N+Y+TP
Sbjct: 292 RDIRSHSTNTTITSVDSASTALNSYSTP 319


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 451 IKLHFMNFCSKFFRYFVDRCFSKKKP 374
           IKLH+ +       Y  ++CF  +KP
Sbjct: 764 IKLHYDHLSQALHEYEREKCFDVRKP 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,162
Number of Sequences: 5004
Number of extensions: 33307
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)