Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    29   2.0  
Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 144 RLNLRELGSVGKELFKNTLLHG*YIYNHYVTNTLYTITPLHHYNILF 4
           R + R L +V     K+T+    YIY+ Y+  T+YTI  ++H   ++
Sbjct: 4   RQHYRSLSTVDIIYIKSTIY---YIYHIYIPYTIYTIHQIYHIYYIY 47


>Z73906-2|CAA98115.1|  586|Caenorhabditis elegans Hypothetical
           protein D2030.2a protein.
          Length = 586

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 429 KFIKCNFMSKIYFCNYFSQIAGQG 500
           ++I C+  +K+YF NYF   A  G
Sbjct: 93  RYIHCDSCNKLYFANYFEDSAKNG 116


>AF047662-7|AAC04439.1|  955|Caenorhabditis elegans Hypothetical
           protein T22B2.1 protein.
          Length = 955

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 445 LHFMNFCSKFFRYFVDRCFSKKKPQI 368
           +H    CS+ F Y   +CF  K+P++
Sbjct: 514 IHSQLVCSRIFGYQCQKCFQPKEPKV 539


>AC024747-3|AAK85498.2|  318|Caenorhabditis elegans Hypothetical
           protein Y110A2AM.1 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 369 ICGFFFEKHRSTKYRKNLEQKFIKCNF 449
           +C FFF  H   K RKNLE    K  F
Sbjct: 264 VCEFFFFAHFLLKMRKNLENLSQKLRF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,847
Number of Sequences: 27780
Number of extensions: 187847
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)