Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55030.1 68414.m06285 F-box family protein contains F-box dom...    29   1.4  
At4g04970.1 68417.m00722 callose synthase, putative / 1,3-beta-g...    27   5.8  
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont...    27   7.7  

>At1g55030.1 68414.m06285 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/22 (50%), Positives = 19/22 (86%)
 Frame = -1

Query: 503 LALTRNLRKIITKIYF*HKVTF 438
           +A+TRN+RK++ ++YF H+ TF
Sbjct: 101 IAMTRNVRKLVLEVYF-HRGTF 121


>At4g04970.1 68417.m00722 callose synthase, putative /
           1,3-beta-glucan synthase, putative similar to callose
           synthase 1 catalytic subunit GI:13649388 from
           [Arabidopsis thaliana]
          Length = 1768

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 352 ISYRKLFVVFFSKNIDQRNIEKIWSK-SS*NVTLCQKYIFVIIFRRL 489
           +++  LF VF+++   Q+N + +WS+ ++  V    K +FV +   L
Sbjct: 385 VAWTVLFSVFYARIWSQKNKDGVWSRAANERVVTFLKVVFVYVIPEL 431


>At1g67510.1 68414.m07690 leucine-rich repeat family protein
           contains protein kinase domain, Pfam:PF00069; contains
           leucine-rich repeats, Pfam:PF00560
          Length = 719

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -3

Query: 144 RLNLR--EL-GSVGKELFKNTLLHG*YIYNHYVTNTL 43
           RLNL   EL GS+  +LF  T LH  ++Y + ++ TL
Sbjct: 100 RLNLHNNELYGSIPTQLFNATSLHSIFLYGNNLSGTL 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,371,547
Number of Sequences: 28952
Number of extensions: 155861
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)