Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H11f
         (393 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   1.5  
UniRef50_Q4YUZ6 Cluster: Putative uncharacterized protein; n=4; ...    32   4.5  
UniRef50_Q54Y75 Cluster: Putative uncharacterized protein; n=1; ...    31   7.9  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +1

Query: 352 RGGARYPIRPIVSR 393
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q4YUZ6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 1171

 Score = 31.9 bits (69), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 288 NTNSTKNNHYTYSVNYYYVDN*LRYY 211
           N NS K N YT S NY Y++N   +Y
Sbjct: 64  NNNSEKENKYTKSYNYNYINNKNNFY 89


>UniRef50_Q54Y75 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 583

 Score = 31.1 bits (67), Expect = 7.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 158 LCQRDSY*TVLLSHQCYKYIKTNIYRRSCTIFTINYTIYY 39
           L   DS  T  LS+Q Y YI+ +I+R    IF +  T+ Y
Sbjct: 396 LSPHDSILTAYLSNQGYSYIELSIFRGLGAIFGLGSTLLY 435


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,808,921
Number of Sequences: 1657284
Number of extensions: 4062693
Number of successful extensions: 7938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7895
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)