Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H11f
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   3.1  
05_04_0344 + 20442041-20442374,20443115-20443210,20444512-204446...    26   9.4  

>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 125 LSHQCYKYIKTNIYRRSCTIFTINYTIYYV 36
           + H   +Y+   IY      FT+NY IYY+
Sbjct: 277 IDHVKLQYLCITIYHLLIACFTVNYFIYYL 306


>05_04_0344 +
           20442041-20442374,20443115-20443210,20444512-20444633,
           20444781-20445029,20445300-20445549,20446036-20446262
          Length = 425

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 98  LCTCNTDDLIIPFNNCHADIDPCRTKRQVNKRHVTLQR 211
           +C+ + DDLIIPFN+        + K  VN  +V L R
Sbjct: 299 MCSPDVDDLIIPFNS--------KVKSMVNTLNVNLPR 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,105,208
Number of Sequences: 37544
Number of extensions: 92635
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)