Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304H11f
(393 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855485-1|ABH88172.1| 128|Apis mellifera chemosensory protein ... 22 2.9
AJ973400-1|CAJ01447.1| 128|Apis mellifera hypothetical protein ... 22 2.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.1
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 5.1
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 21 6.7
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 21 6.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 6.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 8.8
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 20 8.8
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 20 8.8
>DQ855485-1|ABH88172.1| 128|Apis mellifera chemosensory protein 4
protein.
Length = 128
Score = 21.8 bits (44), Expect = 2.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 110 NTDDLIIPFNNCHADIDPCRTKRQVNKRHV 199
NT+ L+ + NC D PC KR++
Sbjct: 38 NTERLLNAYVNCLLDQGPCTPDAAELKRNL 67
>AJ973400-1|CAJ01447.1| 128|Apis mellifera hypothetical protein
protein.
Length = 128
Score = 21.8 bits (44), Expect = 2.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 110 NTDDLIIPFNNCHADIDPCRTKRQVNKRHV 199
NT+ L+ + NC D PC KR++
Sbjct: 38 NTERLLNAYVNCLLDQGPCTPDAAELKRNL 67
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FKSTCKMDVAWFPFDDQHCDM 127
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FKSTCKIDIAWFPFDDQHCDM 127
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FKSTCKIDITWFPFDDQHCDM 127
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FKSTCKMDIAWFPFDDQHCDM 127
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FKSTCKIDITWFPFDDQHCDM 127
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 175 FKSTCKIDITWFPFDDQHCDM 195
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 175 FKSTCKIDITWFPFDDQHCDM 195
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.0 bits (42), Expect = 5.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 288 NTNSTKNNHYTYSVNYYYVDN 226
N N+ NN+Y + N Y +N
Sbjct: 325 NNNNYNNNNYNNNYNNYNNNN 345
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 20.6 bits (41), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 312 HVFNIFF*NTNSTKNNHYTYSVNY 241
++ NI N N+ N Y++NY
Sbjct: 89 YISNISNYNNNNNYNKKLYYNINY 112
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 20.6 bits (41), Expect = 6.7
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 303 NIFF*NTNSTKNNHYTYSVNYYY 235
N + N N+ NN+ Y+ YY
Sbjct: 88 NYNYSNYNNYNNNYNNYNKKLYY 110
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 20.6 bits (41), Expect = 6.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 312 HVFNIFF*NTNSTKNNHYTYSVNY 241
++ NI N N+ N Y++NY
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINY 350
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 8.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 95 FLCTCNTDDLIIPFNNCHADI 157
F TC D PF++ H D+
Sbjct: 107 FGSTCKIDIAWFPFDDQHCDM 127
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Frame = -1
Query: 288 NTNSTKNNHYTYSVNYYYVD 229
N N NN+ Y YY ++
Sbjct: 93 NNNYNNNNYNNYKKLYYNIN 112
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 20.2 bits (40), Expect = 8.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 288 NTNSTKNNHYTYSVNYY 238
N + NN+Y Y+ N Y
Sbjct: 320 NNYNYNNNNYKYNYNNY 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,801
Number of Sequences: 438
Number of extensions: 1709
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9638226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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