Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H10f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    45   0.001
UniRef50_Q23QF9 Cluster: TPR Domain containing protein; n=1; Tet...    33   4.0  
UniRef50_A0IKN9 Cluster: Transcriptional regulator, LysR family;...    33   5.2  
UniRef50_Q9Z3T9 Cluster: Type I polyketide synthase; n=2; Pseudo...    32   9.2  
UniRef50_A2EPX0 Cluster: Putative uncharacterized protein; n=2; ...    32   9.2  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 44.8 bits (101), Expect = 0.001
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +2

Query: 317 AGWWYLPARTHKRSYHQY 370
           A WWYLPARTHKRSYH+Y
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_Q23QF9 Cluster: TPR Domain containing protein; n=1;
           Tetrahymena thermophila SB210|Rep: TPR Domain containing
           protein - Tetrahymena thermophila SB210
          Length = 772

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 368 YYKHSVTKSLLNY--SCIILRPQEQLYRNTLKDLERL 472
           Y K       +NY   CI L+P EQ+Y+N LK+ + L
Sbjct: 726 YEKKQYLSQAINYFSECISLKPSEQIYQNNLKNCKEL 762


>UniRef50_A0IKN9 Cluster: Transcriptional regulator, LysR family;
           n=2; Enterobacteriaceae|Rep: Transcriptional regulator,
           LysR family - Serratia proteamaculans 568
          Length = 310

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 392 SLLNYSCIILRPQEQLYRNTLKDLE--RLQRSHDTLAERV 505
           +LL+Y C+ L P E  Y + ++D++  +L R+   LAERV
Sbjct: 188 ALLDYPCVELTPDESRYHHMVEDMQPKKLARNRLHLAERV 227


>UniRef50_Q9Z3T9 Cluster: Type I polyketide synthase; n=2; Pseudomonas
            syringae group|Rep: Type I polyketide synthase -
            Pseudomonas syringae
          Length = 2731

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 341  RTHKRSYHQYYKHSVTKSLLNYSCIILRPQEQLYRNTLKDLERLQRSHDTL 493
            RT   +Y          SLL+ + + LRP     R+TL+DL R+Q +HD L
Sbjct: 1738 RTQAETYSISAYDETGNSLLHIAALQLRPAS---RDTLRDLARVQPAHDLL 1785


>UniRef50_A2EPX0 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 425

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 204 YMSMGSGNHLTSQ*LNTYTIKNXLIKNIYLNCC 106
           Y+S G+ NHL SQ    Y   N   K ++ NCC
Sbjct: 393 YLSQGNCNHLASQQYEIYRFSN-FNKRVFKNCC 424


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,932,256
Number of Sequences: 1657284
Number of extensions: 9457183
Number of successful extensions: 21532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21527
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)