Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304H10f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1721 - 29023979-29025295 29 1.7
07_01_0083 - 629819-630260,631695-631838,632906-633186 29 3.0
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 29 3.0
02_05_1027 - 33602170-33602622,33602912-33603013 29 3.0
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 28 4.0
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161... 28 5.2
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 27 9.1
05_04_0451 - 21365617-21366279 27 9.1
05_03_0323 - 12424243-12424776 27 9.1
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 27 9.1
02_02_0680 - 12884555-12884767,12884824-12884912,12885259-12885376 27 9.1
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 500 VQPTCRESVGDAPSLSTCSDTVAPV 426
+QP C S S STCSD +PV
Sbjct: 324 IQPNCSVSASSPTSTSTCSDNGSPV 348
>07_01_0083 - 629819-630260,631695-631838,632906-633186
Length = 288
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -2
Query: 394 GFSNGMLIVLVVG---PLVSPRG*I---PPPCLFLPRSSNAFRFEGRGSRCT 257
G++NG+ +V VG P + P G + PPP L LP + +G S C+
Sbjct: 26 GWANGLAVVDAVGELLPPLDPPGELATPPPPPLDLPETPAGSSADGAASSCS 77
>03_05_0626 +
26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 331 IPPPCLFLPRSSNAFRFEGRGSRCTIQRP 245
IPP L +P+ +A + G+R T+ RP
Sbjct: 828 IPPTELIIPKPDHASKVHSEGTRSTLSRP 856
>02_05_1027 - 33602170-33602622,33602912-33603013
Length = 184
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 329 YLPARTHKRSYHQYYKHSVTKSL-LNYSCIILR 424
Y H+ S+H + +H V K L LN C+++R
Sbjct: 129 YYSRNPHQNSHHDHEQHGVLKYLDLNNLCLVIR 161
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 329 YLPARTHKRSYHQYYKHSVTKSLLNY 406
YLPA H+R YH + KH + LL+Y
Sbjct: 127 YLPADLHRRFYHGFCKHYLW-PLLHY 151
>03_06_0753 +
36015026-36015256,36015780-36015885,36016132-36016192,
36016278-36016573,36016654-36016793,36016880-36016954,
36017044-36017134,36017677-36017880,36018409-36018453,
36018745-36018830
Length = 444
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 257 STTAAPPFKPKRITASRQK*AGWWYLPARTHKRSYHQYYKHSVTK 391
S TAA P +PK++ S Q P + H+RS+H K + K
Sbjct: 44 SATAAAPDQPKQVRPSNQN------QPKKGHQRSHHAVDKDAAKK 82
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 190 AHRHIQRKCPHLP*DMSSKVSV*YNGCPA 276
A RHI+ +P D+S +VS YNG A
Sbjct: 483 ASRHIEDGLSQMPHDISGQVSFAYNGLAA 511
>05_04_0451 - 21365617-21366279
Length = 220
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 515 LVLRPVQPTCRESVGDAPSLSTCSDTVAPVD 423
L RP PTCR+ AP + +D VAP D
Sbjct: 177 LAARPTCPTCRQ----APFAAAAADPVAPPD 203
>05_03_0323 - 12424243-12424776
Length = 177
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 389 KSLLNYSCIILRPQEQLYRNTLKDLERLQRSH 484
K++ ++ + EQL++N ++DLE L R H
Sbjct: 56 KTIQDFEVQVNNNMEQLWQNIVQDLEHLLRPH 87
>03_01_0149 -
1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 271 PALQTETHYCFAAEIGRVVVSTRADSQEVLPP 366
PA+ T F AEI R++ S A+S PP
Sbjct: 48 PAMDTGADDGFVAEIDRILESINAESSPAPPP 79
>02_02_0680 - 12884555-12884767,12884824-12884912,12885259-12885376
Length = 139
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 242 LRSLYSTTAAPPFKPKRITASRQK*AGWWYLPARTHKR 355
LRSL S T+ PP P+ + + + + AGW PA ++
Sbjct: 9 LRSLGSNTS-PPSLPRLLLSQQPEDAGWQIRPAPAQEK 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,372
Number of Sequences: 37544
Number of extensions: 269260
Number of successful extensions: 578
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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