Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_17184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 341 RTHKRSYHQYYKHSVTKSL-LNYSCIILRPQEQLYRNTLK-DLER-LQRSHDTLAER 502
           R++KRSY + YK S  +S   +Y     R  E+ Y+ + K   ER  +RS++   ER
Sbjct: 203 RSYKRSYKRSYKRSYKRSYKRSYKRSYERSYERSYKRSYKRSYERSYERSYERSYER 259


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 329 YLPARTHKRSYHQYYKHSVTKSLLNYSCIILRPQEQLYRN-TLKDLERLQRSHDTLAER 502
           +LP R  +   H     S+T+   + + +I   Q+ L  N TLK + +LQ+ H  L E+
Sbjct: 688 HLPVRDTQAPSHHPTHPSLTRRASDGNAVIPVMQQTLKENSTLKRIRQLQQEHLKLQEQ 746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,642
Number of Sequences: 59808
Number of extensions: 317451
Number of successful extensions: 692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)