Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H10f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83841-1|CAI42594.1|  686|Homo sapiens zinc finger CCCH-type con...    29   9.9  
AL050306-1|CAI42834.1|  686|Homo sapiens zinc finger CCCH-type c...    29   9.9  

>Z83841-1|CAI42594.1|  686|Homo sapiens zinc finger CCCH-type
           containing 12B protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = +2

Query: 275 PFKPKRITASRQK*AGWWYLPARTHKRSYHQYYKHSVTKSLLN--YSCIILR--PQ--EQ 436
           P + +R    R++ A W  LP  T    YH Y    ++ SL+   Y  +++R  P+  EQ
Sbjct: 564 PVRQRRPPLCREQHASWDPLPCTTDSYGYHSY---PLSNSLMQPCYEPVMVRSVPEKMEQ 620

Query: 437 LYRNTLKDLERLQRSH 484
           L+RN    +    R H
Sbjct: 621 LWRNPWVGMCNDSREH 636


>AL050306-1|CAI42834.1|  686|Homo sapiens zinc finger CCCH-type
           containing 12B protein.
          Length = 686

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = +2

Query: 275 PFKPKRITASRQK*AGWWYLPARTHKRSYHQYYKHSVTKSLLN--YSCIILR--PQ--EQ 436
           P + +R    R++ A W  LP  T    YH Y    ++ SL+   Y  +++R  P+  EQ
Sbjct: 564 PVRQRRPPLCREQHASWDPLPCTTDSYGYHSY---PLSNSLMQPCYEPVMVRSVPEKMEQ 620

Query: 437 LYRNTLKDLERLQRSH 484
           L+RN    +    R H
Sbjct: 621 LWRNPWVGMCNDSREH 636


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,292,420
Number of Sequences: 237096
Number of extensions: 1549988
Number of successful extensions: 2557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2551
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)