Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    29   1.5  
AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 182 LPEPIDIYNVNAPTYLEI*ALRSLYSTTAAPPFKPKR 292
           LP+ I + N+  P  +++  +    S   APPF+P+R
Sbjct: 394 LPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 182 LPEPIDIYNVNAPTYLEI*ALRSLYSTTAAPPFKPKR 292
           LP+ I + N+  P  +++  +    S   APPF+P+R
Sbjct: 394 LPDHIPMENIEQPKKIQVSNILPYMSKPVAPPFEPER 430


>AF022968-4|AAB69886.2|  458|Caenorhabditis elegans Hypothetical
           protein C10F3.4a protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 480 ERWRRSKSFNVFRYSCSC 427
           ERW  +K +N F Y  +C
Sbjct: 79  ERWENAKQYNAFNYPLNC 96


>AF022968-3|AAV28363.1|  482|Caenorhabditis elegans Hypothetical
           protein C10F3.4b protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 480 ERWRRSKSFNVFRYSCSC 427
           ERW  +K +N F Y  +C
Sbjct: 103 ERWENAKQYNAFNYPLNC 120


>AC024791-5|AAF60661.2|  468|Caenorhabditis elegans Hypothetical
           protein Y47G6A.14 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 503 PVQPTCRESVGD--APSLSTCSDTVAPVDVK*CNCNLRGI**RNAYSTGGRTSCESAR 336
           P  P C+E   D  AP + +C  ++       C  +L+     +AY +GG+T C + R
Sbjct: 8   PTCPVCQEEFDDQKAPFIISCGHSLCET----CIVHLKSDY-SDAYGSGGQTQCPTCR 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,644,874
Number of Sequences: 27780
Number of extensions: 226378
Number of successful extensions: 452
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)