Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H09f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BQG4 Cluster: Chromosome undetermined scaffold_120, w...    33   5.2  
UniRef50_A5K7C3 Cluster: WD domain, G-beta repeat domain contain...    32   6.9  

>UniRef50_A0BQG4 Cluster: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1348

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = -2

Query: 400 PNEIRVYLDRRD*DSSIFMRFKLNAYLSYFEYLYLI*T*FKSNMSGQSRREN 245
           P EI+VYL + + + ++F+R +L  + +Y  Y   I + F+S    Q   EN
Sbjct: 699 PIEIQVYLQQLNGEQAVFLRIELQEHYNYSTYKIAIHSMFQSQRQVQEIIEN 750


>UniRef50_A5K7C3 Cluster: WD domain, G-beta repeat domain containing
            protein; n=2; Plasmodium|Rep: WD domain, G-beta repeat
            domain containing protein - Plasmodium vivax
          Length = 3265

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +3

Query: 84   KIN*LKKQ*VLATQKKKHTNMI*RSKKSTLILKT*HRISHFTTYLTKLDH-TEQTFSR 254
            K N LK   +L  +++KHTN+I   KK  +I K   R  H+   L K +  ++Q +S+
Sbjct: 1499 KSNFLKTSTLLKEEQRKHTNII--RKKENIITKLHEREEHYINKLKKKEEISKQAYSK 1554


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,376,848
Number of Sequences: 1657284
Number of extensions: 7606144
Number of successful extensions: 10098
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10093
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)