Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    27   6.2  

>Z49153-1|CAA89022.1|  293|Caenorhabditis elegans Hypothetical
           protein C32A9.1 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 289 T*FKSNMSGQSRRENVCSV*SNLVKYVVKCEIRCYVFKMS 170
           T F  N  G S   N C + +N   Y+ +CE+    F+ S
Sbjct: 203 TDFAENPVGYSDSFNACEMRANQETYITRCEMTYIYFRQS 242


>Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical
           protein F22G12.8 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 500 LATAARAT-NTKAINLIKASLNKQLSEYVLG 411
           LA AA A    + INLI+ S+NK+++E +LG
Sbjct: 114 LAEAAGAILKIRKINLIEDSINKKIAEDILG 144


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  KNQHLLISHFHWDSTYALCKIN*LKKQ*VLATQKKK 134
           K QH++++H       AL ++N LK+Q V+   KKK
Sbjct: 264 KRQHVVVAH----KKKALARLNALKRQHVVVAHKKK 295



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  KNQHLLISHFHWDSTYALCKIN*LKKQ*VLATQKKK 134
           K QH++++H       AL ++N LK+Q V+   KKK
Sbjct: 284 KRQHVVVAH----KKKALARLNALKRQHVVVAHKKK 315



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 27  KNQHLLISHFHWDSTYALCKIN*LKKQ*VLATQKKK 134
           K QH++++H       AL ++N LK+Q V+   KKK
Sbjct: 304 KRQHVVVAH----KKKALARLNALKRQHVVVAHKKK 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,450,243
Number of Sequences: 27780
Number of extensions: 198936
Number of successful extensions: 264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)