Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30272| Best HMM Match : GDI (HMM E-Value=0)                        214   3e-56
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)              105   2e-23
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   59   2e-09
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               30   1.0  
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   4.1  
SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   27   9.4  

>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score =  214 bits (523), Expect = 3e-56
 Identities = 99/162 (61%), Positives = 127/162 (78%), Gaps = 2/162 (1%)
 Frame = +1

Query: 28  MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 204
           MD EY  +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+  F    
Sbjct: 1   MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTD 60

Query: 205 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLEFKSIEGSYVYKGGKISKV 381
            P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+ FK IEGS+VY+GG + KV
Sbjct: 61  FPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKV 120

Query: 382 PVDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXGF 507
           P ++KEAL S LMG+FEKRRFRNFLI+      E+A TW  +
Sbjct: 121 PANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDY 162


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score =  105 bits (252), Expect = 2e-23
 Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
 Frame = +1

Query: 73  ECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDW 240
           ECILSG LSV+GKKVLH+D  K+YGGE+AS+TPL +LF KFN   P E     +GR RDW
Sbjct: 19  ECILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDW 78

Query: 241 NVDLIPKFLMANGL 282
           NVDL+PKF+MA G+
Sbjct: 79  NVDLVPKFIMAGGI 92


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/77 (33%), Positives = 43/77 (55%)
 Frame = +1

Query: 232 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 411
           R +N+DL PK L++ G LV+ LI   ++ Y EFK++     +  G +  VP  + +  +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382

Query: 412 DLMGMFEKRRFRNFLIY 462
            L+ + EKR    FL +
Sbjct: 383 KLIPVIEKRLLMKFLTF 399



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 25/44 (56%), Positives = 30/44 (68%)
 Frame = +1

Query: 37  EYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 168
           EY  IVLGTGL E +++  LS  G KVLH+DRN YY  + AS T
Sbjct: 7   EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 287 SNCLFTRASPGTWSLSPSKEVMFTKVEKSPKYL 385
           SNC+ T+ S  T  L P+K+V+  +  + PK L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725


>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -2

Query: 256 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 107
           +++Q +  D+D    +  P++ T   +P TG  + +H ++T  DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 34  EEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 150
           +E   +V+G+G+     + +L+ +GKK+L ++++   GG
Sbjct: 84  DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -3

Query: 450 VAETPLLKHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVP 316
           V++T L ++   IR      I+ YFG+ +  VNI   D  K QVP
Sbjct: 735 VSDTSLPEYTSVIRN-----IEEYFGNLTASVNILEVDLTKCQVP 774


>SB_50276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  GNRLKRMYFKRHVVGFWEEGFAHRSQ*VLRW*ICVNY 167
           GNR  R+  K ++   +E+GF        RW IC  +
Sbjct: 80  GNRSVRVILKTYLCVSYEQGFCKSGNSCTRWHICKGF 116


>SB_23374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 137 LLRSMCKTFFPETDNMPLKIHSFKPVPRTITSYS 36
           L+   C+   PETDN PL ++   P+   I +YS
Sbjct: 23  LIIDSCRIRLPETDNRPLYVNRL-PLGNNIFAYS 55


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 316 RYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYV 465
           R+L+F+ +  S + KG    K+P  + E +A ++  +  +R F   L Y+
Sbjct: 368 RWLQFEKVVASLIEKGFNSIKLP--EAERIAEEVCQIDNEREFLTLLNYL 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,916
Number of Sequences: 59808
Number of extensions: 332353
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)