Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304H08f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical p... 255 1e-68
Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical p... 255 1e-68
U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein. 255 1e-68
AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical ... 54 5e-08
AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical ... 54 5e-08
Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical pr... 27 6.2
U23524-7|AAZ32812.1| 217|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine r... 27 8.1
>Z99281-33|CAJ44242.1| 459|Caenorhabditis elegans Hypothetical
protein Y57G11C.10b protein.
Length = 459
Score = 255 bits (625), Expect = 1e-68
Identities = 122/161 (75%), Positives = 134/161 (83%), Gaps = 2/161 (1%)
Frame = +1
Query: 28 MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 207
MDEEY IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 208 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 381
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 382 PVDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXG 504
P D+ EALA+ LMGMFEKRRF+ FL++VQ E TW G
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQG 161
>Z99281-32|CAB16511.1| 444|Caenorhabditis elegans Hypothetical
protein Y57G11C.10a protein.
Length = 444
Score = 255 bits (625), Expect = 1e-68
Identities = 122/161 (75%), Positives = 134/161 (83%), Gaps = 2/161 (1%)
Frame = +1
Query: 28 MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 207
MDEEY IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 208 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 381
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 382 PVDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXG 504
P D+ EALA+ LMGMFEKRRF+ FL++VQ E TW G
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQG 161
>U00002-1|AAA17051.1| 444|Caenorhabditis elegans rabGDI protein.
Length = 444
Score = 255 bits (625), Expect = 1e-68
Identities = 122/161 (75%), Positives = 134/161 (83%), Gaps = 2/161 (1%)
Frame = +1
Query: 28 MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 207
MDEEY IVLGTGLKECI+SGMLSVSGKKVLHIDRN YYGGESAS+TPLE+L+ KF+ P
Sbjct: 1 MDEEYDAIVLGTGLKECIISGMLSVSGKKVLHIDRNNYYGGESASLTPLEQLYEKFHGPQ 60
Query: 208 --PDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 381
P + GRGRDWNVDLIPKFLMANG LVKLLIHTGVTRYLEFKSIE S+V KGGKI KV
Sbjct: 61 AKPQQEMGRGRDWNVDLIPKFLMANGPLVKLLIHTGVTRYLEFKSIEASFVVKGGKIYKV 120
Query: 382 PVDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXG 504
P D+ EALA+ LMGMFEKRRF+ FL++VQ E TW G
Sbjct: 121 PADEMEALATSLMGMFEKRRFKKFLVWVQQFDENKEDTWQG 161
>AC091125-8|AAP46267.1| 353|Caenorhabditis elegans Hypothetical
protein Y67D2.1b protein.
Length = 353
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +1
Query: 28 MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 168
+ E V+VLGTGL E IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 5 LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +1
Query: 232 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 396
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 397 EALASDLMGMFEKRRFRNFLIY 462
E S+ + + EKR F+ +
Sbjct: 182 EIFQSNALSILEKRALMKFITF 203
>AC091125-7|AAK27890.1| 510|Caenorhabditis elegans Hypothetical
protein Y67D2.1a protein.
Length = 510
Score = 54.4 bits (125), Expect = 5e-08
Identities = 24/47 (51%), Positives = 33/47 (70%)
Frame = +1
Query: 28 MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 168
+ E V+VLGTGL E IL+ + +G VLH+DRN+YYGG+ +S T
Sbjct: 5 LPESVDVVVLGTGLPEAILASACARAGLSVLHLDRNEYYGGDWSSFT 51
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +1
Query: 232 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-----YKGGKISKVPVDQK 396
R +++DL+PK L++ G +V+ L + V+ Y EFK + G ++ VP +
Sbjct: 122 RRFSIDLVPKILLSKGAMVQTLCDSQVSHYAEFKLVNRQLCPTETPEAGITLNPVPCSKG 181
Query: 397 EALASDLMGMFEKRRFRNFLIY 462
E S+ + + EKR F+ +
Sbjct: 182 EIFQSNALSILEKRALMKFITF 203
>Z81553-7|CAB04496.4| 797|Caenorhabditis elegans Hypothetical
protein F56H6.7 protein.
Length = 797
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 381 YFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQVNVPVS 232
YFGD + N T + L Q P ++ KQ + QK +N V + V+
Sbjct: 456 YFGDIVDWCNETGYSNLSNQFPSATQLAKQHG-DTYVFQKDQNSVLIAVN 504
>U23524-7|AAZ32812.1| 217|Caenorhabditis elegans Hypothetical
protein C29F5.8 protein.
Length = 217
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 478 PWKSERRLRSCGNASSQTCP*DQTQELL 395
PWKS++++R C SS D + E +
Sbjct: 187 PWKSQKQVRFCQRCSSSFANVDSSDEFI 214
>AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine
receptor, class h protein92 protein.
Length = 348
Score = 27.1 bits (57), Expect = 8.1
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +1
Query: 241 NVDLIPKFLMANGLLVK--LLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASD 414
N+ LI + + L+VK I + +TR L + SY ISK+P+DQ+ A
Sbjct: 123 NLSLIYLYESRSSLIVKNKFKITSSMTRALYYSLNYMSYFPTLYFISKIPMDQESAKLDV 182
Query: 415 LMGM-FEKRRFRNFLIYVQIS 474
L M + F +YV IS
Sbjct: 183 LKSMPCPTQEFFTQEVYVLIS 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,910
Number of Sequences: 27780
Number of extensions: 254046
Number of successful extensions: 679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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