Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i...   195   1e-50
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i...   193   7e-50
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...   102   1e-22
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote...    49   2e-06
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long...    30   0.82 
At1g79020.1 68414.m09214 transcription factor-related similar to...    29   2.5  
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ...    28   4.4  
At4g36070.1 68417.m05135 calcium-dependent protein kinase family...    28   4.4  
At4g31650.1 68417.m04495 transcriptional factor B3 family protei...    27   7.7  
At3g62010.1 68416.m06964 expressed protein                             27   7.7  
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi...    27   7.7  

>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
           identical to GDP dissociation inhibitor [Arabidopsis
           thaliana] GI:1655424
          Length = 445

 Score =  195 bits (476), Expect = 1e-50
 Identities = 97/160 (60%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
 Frame = +1

Query: 28  MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 207
           MDEEY VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+  L +L+ KF    
Sbjct: 1   MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59

Query: 208 PDETY-GRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 384
               + G  RD+NVD++PKF+MANG LV++LIHT VT+YL FK+++GSYV+  GK+ KVP
Sbjct: 60  KAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVP 119

Query: 385 VDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXG 504
               EAL S LMG+FEKRR   F  YVQ   E+D KT  G
Sbjct: 120 ATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDG 159


>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
           identical to Rab GDP dissociation inhibitor AtGDI2
           [Arabidopsis thaliana] GI:2446981
          Length = 444

 Score =  193 bits (470), Expect = 7e-50
 Identities = 98/161 (60%), Positives = 117/161 (72%), Gaps = 2/161 (1%)
 Frame = +1

Query: 28  MDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 204
           MDEEY VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+  L +L+ KF    
Sbjct: 1   MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59

Query: 205 -APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 381
            AP E  G  RD+NVD++PKF+M NG LV+ LIHT VT+YL FK+++GSYV+  GK+ KV
Sbjct: 60  KAP-EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKV 118

Query: 382 PVDQKEALASDLMGMFEKRRFRNFLIYVQISREEDAKTWXG 504
           P    EAL S LMG+FEKRR   F  +VQ   E+D KT  G
Sbjct: 119 PATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDG 159


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score =  102 bits (245), Expect = 1e-22
 Identities = 50/79 (63%), Positives = 59/79 (74%)
 Frame = +1

Query: 268 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 447
           MANGLLV+ LIHT VT+YL FK+++GS+VYK GKI KVP    EAL S LMG+FEKRR R
Sbjct: 1   MANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRAR 60

Query: 448 NFLIYVQISREEDAKTWXG 504
            F IYVQ   E+D K+  G
Sbjct: 61  KFFIYVQDYDEKDPKSHEG 79


>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
           / Rab GTPase activator family protein similar to
           SP|P26374 Rab proteins geranylgeranyltransferase
           component A 2 (Rab escort protein 2) {Homo sapiens};
           contains Pfam profile PF00996: GDP dissociation
           inhibitor
          Length = 563

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = +1

Query: 1   IELIFYTIIMDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLE 177
           I++  Y  +    Y +IV+GTG+ E +L+   S SG  VLH+D N +YG   AS++ P  
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 178 ELFAKFNAPAP 210
             F   N+ +P
Sbjct: 62  TSFLHSNSVSP 72



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = +1

Query: 232 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-YKGGKISKVPVDQKEAL 405
           R +NVDL  P+ +      + L++ +G   Y+EFKSI+ S+V    G++  VP D + A+
Sbjct: 118 RRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVP-DSRAAI 176

Query: 406 ASD-LMGMFEKRRFRNFLIYVQ 468
             D  + + EK +   F   VQ
Sbjct: 177 FKDKSLTLLEKNQLMKFFKLVQ 198


>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
           chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 726

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 25  IMDEEYXVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 165
           +M  +   +V+G+G    + +G+L+ +G KVL I+   YY     S+
Sbjct: 219 VMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265


>At1g79020.1 68414.m09214 transcription factor-related similar to
           enhancer of polycomb (GI:3757890) [Drosophila
           melanogaster]; similar to enhancer of polycomb
           (GI:11907923) [Homo sapiens]
          Length = 453

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 471 NLNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 340
           ++ VD EVA  P  K A +I    F ++D Y  D+S TF    S+
Sbjct: 46  SVEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90


>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 238

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 97  SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 276
           ++ G K  H +  K  GG S+S++  E++ +  +  +      RG D N+  IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216

Query: 277 G 279
           G
Sbjct: 217 G 217


>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
           protein / CDPK family protein contains Pfam domains,
           PF00069: Protein kinase domain and PF00036: EF hand
          Length = 536

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 271 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD 390
           A   + KLL+     R    +++  S+V +GG+ S+VP+D
Sbjct: 301 AKDFVKKLLVKEPRARLTAAQALSHSWVKEGGEASEVPID 340


>At4g31650.1 68417.m04495 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 493

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 19  TIIMDEEYXVIVLGTGLKE 75
           T++MD+ Y  +VLG+GL+E
Sbjct: 439 TLLMDKRYTRMVLGSGLRE 457


>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +1

Query: 55   LGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGR 234
            L T LKE IL+ +    G+ +LH +       +S  I   E +  + N   P E Y   +
Sbjct: 989  LETRLKEDILAEVRETGGRMLLHREEYSPASNQSRVIGYWENIQPE-NVKTPAEVYAALK 1047

Query: 235  DWNVDL 252
            D N ++
Sbjct: 1048 DENYNI 1053


>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 721

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 133 NKYYGGESASITPLEELFAKFNAPAPD 213
           N  +GGE   I+ LEEL A    PA D
Sbjct: 621 NMEFGGEVEEISSLEELKAALTRPASD 647


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,576,815
Number of Sequences: 28952
Number of extensions: 243929
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)