Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H06f
         (493 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QPN2 Cluster: GLP_54_5096_4143; n=1; Giardia lamblia ...    33   2.6  
UniRef50_P13215 Cluster: Major DNA-binding protein; n=4; Cytomeg...    33   2.6  
UniRef50_Q4XZG1 Cluster: Putative uncharacterized protein; n=1; ...    32   8.0  
UniRef50_Q23388 Cluster: Putative uncharacterized protein; n=2; ...    32   8.0  
UniRef50_Q1DIM1 Cluster: Predicted protein; n=2; Coccidioides im...    32   8.0  

>UniRef50_Q7QPN2 Cluster: GLP_54_5096_4143; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_54_5096_4143 - Giardia lamblia ATCC
           50803
          Length = 317

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 216 HRGHFTQEYQNDTTNYKFHPYQDSL-VSPASVES 118
           +RG FT    ++   YKF PY DSL VS AS+ES
Sbjct: 100 YRGEFTLAGISEYIRYKFAPYDDSLVVSDASLES 133


>UniRef50_P13215 Cluster: Major DNA-binding protein; n=4;
           Cytomegalovirus|Rep: Major DNA-binding protein - Simian
           cytomegalovirus (strain Colburn)
          Length = 1160

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 439 KMMKFMDSYSYNESKTMNRHLSFFNGIIPTLDKFDDDEVLEF 314
           K M+ +DS +  ++ T+N    F N ++ +L+KF DDE + F
Sbjct: 570 KKMRLIDSVTGEDTMTINGRSDFIN-LVSSLNKFVDDEAMSF 610


>UniRef50_Q4XZG1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 1258

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 472 TYEECSYPLDAKMMKFMDSYSYNE-SKTMNRHLSFFNGIIPTLDK-FDDDEVLEFQMGVL 299
           T+E+ S  +   +++FMD ++YN+ +K +N   S  N I+   +K  D +  L  Q  +L
Sbjct: 736 THEDTSDEIKNNLLQFMDYHTYNKINKIINIKESDMNNILLVCEKVLDKNSFLCLQYNIL 795

Query: 298 QLLK 287
           +  K
Sbjct: 796 KFYK 799


>UniRef50_Q23388 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 2219

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 421 DSYSYNESKTMNRHLSFFNG 362
           D Y YNES +M  HL F NG
Sbjct: 406 DQYQYNESTSMENHLGFHNG 425


>UniRef50_Q1DIM1 Cluster: Predicted protein; n=2; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 197

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 198 QEYQNDTTNYKFHPYQDSLVSPASVESSDSNYTE 97
           ++ Q    N K H +++ LV P S+  SDSNY++
Sbjct: 13  EKSQKCNNNQKHHLFREELVHPNSITLSDSNYSQ 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,612,870
Number of Sequences: 1657284
Number of extensions: 8399386
Number of successful extensions: 17552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17542
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)