Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H06f
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    28   0.66 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   0.66 
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPCC126.13c |||histone deacetylase complex subunit, SAP128 famil...    25   4.7  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    25   8.2  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   8.2  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   8.2  

>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 207 HFTQEYQN-DTTNYKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLLT*IEIHFNNQL 34
           HF ++++    +  +F+PY  + VS      S       YFN   +L+   E+HFN  L
Sbjct: 222 HFNEDFKEYGASRSEFYPYLLAAVSDRGEHHSIPPEDTPYFNAGLMLIRPSELHFNRIL 280


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 192 YQNDTTNYKFHPYQDSLVSPASVESSDSNYTE 97
           + ND +     P ++ L S  SVE++DS YT+
Sbjct: 94  FPNDNSVIALKPNEEKLNSSLSVENNDSTYTD 125


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 439 KMMKFMDSYSYNESKTMNRHLSFFNGIIPTLDKFDDDE 326
           + MK  +  S  +SK  +  LSF +G+IP    F D E
Sbjct: 68  RSMKMEEHPSLLQSKYPSNFLSFKDGLIPVFKTFYDPE 105


>SPCC126.13c |||histone deacetylase complex subunit, SAP128 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 409 YNESKTMNRHLSFFNGIIPTLDKFDDDEVLEFQMGVL---QLLKN 284
           Y++ +T N  L  F  +IP++  +    +  +++GVL   QLL N
Sbjct: 30  YHQFQTKNHVLDIFEDVIPSIQVYGWLTMTLYELGVLIADQLLLN 74


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 156 YQDSLVSPASVESSDSNYT-EIYFNDFELLL--T*IEIHFNNQLH*YNFNNFNLK 1
           Y + L   + VE +D   T   Y  D  + +     ++H  N +H Y+FN    K
Sbjct: 70  YSERLAPDSGVEPTDIEGTLNTYLKDRSIKVEGNSFDVHSANSIHNYSFNGKTFK 124


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -2

Query: 201 TQEYQNDTTNYKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLLT*IEIHFNN 40
           + EY  D   +    Y +++ +   +  SDS  + I   D E  L   EIH  N
Sbjct: 105 SHEYNTDDVVFYDVDYPETIENRVQMIRSDSFLSSIVLEDKEFDLDGTEIHTKN 158


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 150 DSLVSPASVESSDSNYTEIYFNDFELLL 67
           D L+S A + SS S YT   F+D ELL+
Sbjct: 709 DCLISFARI-SSQSGYTRPEFSDKELLI 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,299
Number of Sequences: 5004
Number of extensions: 38085
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)