Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H06f
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0561 - 4418452-4418658,4420168-4420509                           29   2.0  
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223...    29   2.7  
07_03_1330 + 25848372-25849157                                         27   8.2  
06_03_1237 + 28602250-28604196                                         27   8.2  
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    27   8.2  
03_03_0257 + 15903723-15905201                                         27   8.2  

>11_01_0561 - 4418452-4418658,4420168-4420509
          Length = 182

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 90  NKFLCS*NRRIRQRPDLQENLDRDGICSLW 179
           N  L +  RR RQR   +   D DG+CS+W
Sbjct: 86  NAGLSTVRRRRRQRTTARSADDEDGLCSMW 115


>10_08_0999 +
           22121029-22121235,22121819-22122082,22122123-22122324,
           22122456-22122590,22122668-22122778,22122871-22122959,
           22123237-22123299,22123461-22123636,22123785-22123887,
           22124286-22124461,22124625-22124733,22124851-22124943,
           22126294-22126435,22126655-22126671
          Length = 628

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 415 YSYNESKTMNRHLSFFNGIIPTLDKFDDDEVLEFQMGVLQLL 290
           +++   + + + L+ + G++P   KF DD    F   +  LL
Sbjct: 504 FAFTNEERVKQRLALYQGVVPIYMKFSDDAEETFSRAISSLL 545


>07_03_1330 + 25848372-25849157
          Length = 261

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 457 SYPLDAKMMKFMDSYSYNESKTMNRHLSFFNGIIPTLDKFDDDEVL 320
           SY    K++++ D ++ N++ T  R     N     +DK D+D +L
Sbjct: 131 SYKALMKVIEYCDEHANNKADTDERKEELKNWDKAFIDKLDEDNIL 176


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 VRIGGFDRGRTYKRILIGMEFVVCG 180
           V +GGFDR R  +  LIG  +V CG
Sbjct: 168 VLVGGFDRHRFVENSLIG-AYVACG 191


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -2

Query: 207 HFTQEYQNDTTN--YKF---HPYQDSLVSPASVESSDSNYTEIYFNDFE 76
           H T EY+  T    Y F    P Q  +++    +  D   TEI F D+E
Sbjct: 585 HNTPEYRGHTAEGTYNFTSTEPLQHPIITQIESDQDDLGNTEIIFPDYE 633


>03_03_0257 + 15903723-15905201
          Length = 492

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 186 NDTTNYKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLLT*IEIH 49
           N   +Y + P   S  S ASV+     YT ++  +++ L++ +E H
Sbjct: 218 NFPADYAYFPSPGSPPSQASVQDGGVLYTNVFDANYDTLISALEKH 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,993
Number of Sequences: 37544
Number of extensions: 207726
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)