Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H06f
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_39247| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_15827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 189 QNDTTNYKFHPYQDSLVSPASVESSDSNYTEIYF 88
           + + T  KF PY  +L SPA  E S S  T  +F
Sbjct: 185 RRNPTRRKFLPYPKALASPAPGEMSKSTRTVSFF 218


>SB_39247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 216 HRG-HFTQEYQNDTTNYKFHPYQDSLV--SPASVESSDSNYTEIYFNDFELLL 67
           H G HFT   +ND  +       D LV   P    SS+S Y+E Y+N   ++L
Sbjct: 9   HLGRHFTGHAKNDALSSNSCSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVL 61


>SB_15827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 171 YKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLL 67
           Y +  YQ  L  P    SS+S Y+E Y+N   ++L
Sbjct: 244 YCYDAYQHVLERPPPRWSSNSPYSESYYNSLAVVL 278


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 216 HRGH-FTQEYQNDTTNYKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLL 67
           H+G+  +  +  +  N +  P  D L  P    SS+S Y+E Y+N   ++L
Sbjct: 32  HKGNPISVGWDREPKNGQRAPINDFLERPPPRWSSNSPYSESYYNSLAVVL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,723
Number of Sequences: 59808
Number of extensions: 245357
Number of successful extensions: 1985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)