Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H06f
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68600.1 68414.m07839 expressed protein contains Pfam profile...    31   0.56 
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    30   0.97 
At5g60410.2 68418.m07579 DNA-binding family protein contains Pfa...    27   5.2  
At5g60410.1 68418.m07578 DNA-binding family protein contains Pfa...    27   5.2  
At5g46910.1 68418.m05783 transcription factor jumonji (jmj) fami...    27   9.1  

>At1g68600.1 68414.m07839 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 537

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +1

Query: 76  FKVIKINFCVVRIGG-----FDRGRTYKRILIGMEFVVCGIILVFL 198
           F+V K+ +C+V + G     F     Y+ +LIG+   +C ++ VFL
Sbjct: 168 FRVFKLTYCIVLVSGNNSRDFLSTAYYRILLIGLGATICLLVNVFL 213


>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 289 SIIVALPFGIRGLHHHQTYPMLVLSH*KMKDADSLF*IHYMNKNP*ISSSSHL 447
           S +  LP G++       YP L+ +H  +   ++ +   Y  K P + S+SHL
Sbjct: 116 SAVEPLPPGVKRTSEALYYPTLLGAHNTIGQTEAWYTTDYFTKRPKLESTSHL 168


>At5g60410.2 68418.m07579 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 885

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 FPTATPDGDCF*YFSIIVALPFGIRGLHHH 336
           FP+ TP+   F  F     +  G+ GLHHH
Sbjct: 672 FPSETPEAPGFQLFRSDADVSGGLVGLHHH 701


>At5g60410.1 68418.m07578 DNA-binding family protein contains Pfam
           profiles: PF02037 SAP domain, PF02891 MIZ zinc finger,
           PF00628 PHD-finger
          Length = 873

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 247 FPTATPDGDCF*YFSIIVALPFGIRGLHHH 336
           FP+ TP+   F  F     +  G+ GLHHH
Sbjct: 672 FPSETPEAPGFQLFRSDADVSGGLVGLHHH 701


>At5g46910.1 68418.m05783 transcription factor jumonji (jmj) family
           protein contains Pfam domains PF02375: jmjN domain and
           PF02373: jmjC domain
          Length = 707

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 180 TTNYKFHPYQDSLVSPASVESSDSNYTEIYFNDFELLLT*IEIHFNNQL 34
           TT+   + Y  S+  PA+ E   + Y+ IYF DF    T +E+  ++QL
Sbjct: 486 TTDEDLYKYPSSITLPAAKEDGYTPYSTIYF-DF---YTEVEMTSHDQL 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,529,169
Number of Sequences: 28952
Number of extensions: 181315
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)