Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H05f
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q67V64 Cluster: Putative uncharacterized protein P0047B...    30   6.2  
UniRef50_UPI0000D8A031 Cluster: hypothetical protein, conserved;...    32   7.5  

>UniRef50_Q67V64 Cluster: Putative uncharacterized protein
           P0047B10.24; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0047B10.24 - Oryza sativa subsp. japonica (Rice)
          Length = 72

 Score = 30.3 bits (65), Expect(2) = 6.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 198 CCCSLLCCFELV*VLIGNPLP 136
           CCCS  CC   + V + +PLP
Sbjct: 22  CCCSCSCCLRQLAVALAHPLP 42



 Score = 21.0 bits (42), Expect(2) = 6.2
 Identities = 5/11 (45%), Positives = 5/11 (45%)
 Frame = -1

Query: 207 WPVCCCSLLCC 175
           W   CC   CC
Sbjct: 12  WKASCCCCCCC 22


>UniRef50_UPI0000D8A031 Cluster: hypothetical protein, conserved; n=1;
            Eimeria tenella|Rep: hypothetical protein, conserved -
            Eimeria tenella
          Length = 1486

 Score = 31.9 bits (69), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -3

Query: 286  TNPEAV-CCWSTDCXNICICLTGRCCSXAC 200
            ++P AV CC+   C   C C + RCC   C
Sbjct: 1337 SSPNAVSCCFCCCCCCCCCCFSCRCCCCCC 1366


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,088,347
Number of Sequences: 1657284
Number of extensions: 5440985
Number of successful extensions: 12346
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12292
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)