Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H05f
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)                     31   0.49 
SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)                30   1.1  

>SB_25372| Best HMM Match : DoxX (HMM E-Value=0.96)
          Length = 244

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 222 AGAARWPVCCCSLLCCF 172
           +GA RW   CCSL CC+
Sbjct: 97  SGACRWWCFCCSLFCCY 113


>SB_34105| Best HMM Match : Extensin_2 (HMM E-Value=4.8)
          Length = 623

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 283 LFLMHYCSDYY*KSVHTFYLLYQLFCINI 369
           L   +YC+ YY  S+    LLYQ +C +I
Sbjct: 130 LLHQYYCNQYYCTSITAPVLLYQYYCTSI 158



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 268 IQPLGLFLMHYCSDYY*KSVHTFYLLYQLFCINI 369
           +QP+ L   +YC+ YY  S+    LL+Q +C +I
Sbjct: 325 LQPV-LLHQYYCNQYYCTSITAPVLLHQYYCTSI 357



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 HYCSDYY*KSVHTFYLLYQLFCINIV 372
           +YC+ YY  S+    LL+Q +C +I+
Sbjct: 229 YYCNQYYCTSITAPVLLHQYYCTSII 254



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 283 LFLMHYCSDYY*KSVHTFYLLYQLFCINI 369
           L   +YC+ YY  S+    LL+Q +C +I
Sbjct: 97  LLHQYYCNQYYCTSITAPVLLHQYYCTSI 125



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 283 LFLMHYCSDYY*KSVHTFYLLYQLFCINI 369
           L   +YC+ YY  S+    LL+Q +C +I
Sbjct: 514 LLHQYYCNQYYCTSITAPVLLHQYYCTSI 542



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 295 HYCSDYY*KSVHTFYLLYQLFCINI 369
           +YC+ YY  S+    LL+Q +C +I
Sbjct: 471 YYCNQYYCTSITAPVLLHQYYCTSI 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,681,642
Number of Sequences: 59808
Number of extensions: 188389
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)