Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H05f
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    27   7.0  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical
           protein ZC84.1 protein.
          Length = 1556

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 271 VCCWSTDCXNICICLTGRCCSXACMLLQSSMLF 173
           VC ++TDC +   C TG C   +  +L+ S  +
Sbjct: 107 VCQYNTDCLSGMYCATGLCSCLSTYILRESYCY 139


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 201 VCCCSLLCCFELV 163
           VCCC L CC  L+
Sbjct: 200 VCCCPLTCCLPLI 212


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +1

Query: 16  ADPCVTIFSSKYIESKRRLLQTFYSKSCSNYKFKGNAHKGGQGVTDKNLDELETA*KTAT 195
           A+    I  SK    K+ + +   +K   N K K N  K   G  D  L+ELE    T T
Sbjct: 578 AEKISNITISKTKPLKKAVTKVSAAKKILNKKLKVNTKKTF-GAEDDELEELEEGPSTIT 636

Query: 196 AY 201
           +Y
Sbjct: 637 SY 638


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,673,897
Number of Sequences: 27780
Number of extensions: 142732
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)