Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H05f
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   2.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   2.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.1  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 283 NPEAVCCWSTDCXNICICLTGRCC 212
           NP    CWS D     + +   CC
Sbjct: 386 NPVIYACWSRDFRRAFVRILCACC 409


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 363 QYC*YKVCLS*GIK 404
           QYC Y+ CL+ G+K
Sbjct: 163 QYCRYQKCLAMGMK 176


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 363 QYC*YKVCLS*GIK 404
           QYC Y+ CL+ G+K
Sbjct: 163 QYCRYQKCLAMGMK 176


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 167 SSKQHRRLQQHTGXR 211
           S K HR ++ HTG R
Sbjct: 160 SGKLHRHMRIHTGER 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,320
Number of Sequences: 438
Number of extensions: 1563
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)