Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H05f
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46590.1 68416.m05057 telomere repeat-binding protein, putati...    27   5.0  
At4g03610.1 68417.m00496 phosphonate metabolism protein-related ...    27   8.7  

>At3g46590.1 68416.m05057 telomere repeat-binding protein, putative
           similar to telomere repeat-binding protein TRP1
           [Arabidopsis thaliana] gi|5459298|emb|CAB50690
          Length = 552

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 49  YIESKRRLLQTFYSKSCSNYKFKGNAHKGGQGVT 150
           Y   KR+   + Y  +  +Y+ +G  HKG + ++
Sbjct: 235 YPIKKRKYFDSVYDSNSDDYRLQGKTHKGSRTIS 268


>At4g03610.1 68417.m00496 phosphonate metabolism protein-related
           weak similarity to PhnP protein. (Swiss-Prot:P16692)
           [Escherichia coli]
          Length = 290

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 32  RSSLLNTLKAKDACYKPFTASHAQTTSLKAMHTKE 136
           R SLL+    ++ C +PF AS    T L  MH ++
Sbjct: 151 RVSLLDWKNIEENCDEPFAASGLSFTPLPVMHGED 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,211
Number of Sequences: 28952
Number of extensions: 121826
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)