Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H03f
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.2  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   4.9  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   6.5  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    25   8.6  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.6  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 236 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 403
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +2

Query: 11  NL*S*SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANTVTPTVELRKDGDEYNLV 190
           N+ S   K  FV + Y+  S  +  +F K    G +  + +NT + +V  +++ D  +  
Sbjct: 132 NMQSSPSKDPFVSQDYEKESISS-SQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASNA 190

Query: 191 TSSTFKTTEMKFKP 232
           +SS+   +    KP
Sbjct: 191 SSSSSVVSSPSLKP 204


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 56  YKMTSSENFDEFMKTIGVGLITR 124
           +K++S++  DEF++    G+ITR
Sbjct: 140 FKLSSTKALDEFLEAKEAGIITR 162


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 260 DGAKVKSVCTFEGNTLKQVQKAPDGLEVTY 349
           D  +++++C+F+   LK   + P+   VTY
Sbjct: 313 DTERLENLCSFQSTILKHALQFPNCRHVTY 342


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
 Frame = -1

Query: 484 RDVRESAAPTPDLGIESLLDLVDSGASHVL-SCHHSFH--LLRAEFPDVSDFKTVGGLLD 314
           RD   S A    LG + L      G  HV  +  H  H  ++ A FPD +   T+   + 
Sbjct: 46  RDGNHSVADLMSLGKDML------GKRHVQPNVVHLLHEIMIEATFPDGTYLITIHDPIC 99

Query: 313 LLEGVAFECAYGFHLSTVSAVLFEL 239
             +G      YG  L T S  LF L
Sbjct: 100 TTDGNLEHALYGSFLPTPSQELFPL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,193
Number of Sequences: 5004
Number of extensions: 38428
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)