Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H02f
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    34   5e-04
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    27   0.092
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.86 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.86 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   2.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 34.3 bits (75), Expect = 5e-04
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 155 SCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQPGV 334
           S + + NVQ+    +L +L+ + L  N I  LE  AF +LKS++ L+    KI+ I    
Sbjct: 100 SFNSVRNVQQHTFADLIQLEQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATIAYET 159

Query: 335 FKD 343
           F++
Sbjct: 160 FQN 162



 Score = 23.4 bits (48), Expect = 0.86
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAF-SDL-KSMRFLDWSXXKISY 319
           LD+S +++ NV     + L+ L  + L  N I  +  G F  D+ + +  + +S   +  
Sbjct: 47  LDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRN 106

Query: 320 IQPGVFKD 343
           +Q   F D
Sbjct: 107 VQQHTFAD 114



 Score = 21.8 bits (44), Expect = 2.6
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFS 268
           LD+S +++  +       + RL  L L  N+ + LE+   S
Sbjct: 399 LDLSYNRLGQIDAGTFKGIPRLASLNLGHNSQLTLEINGLS 439


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 26.6 bits (56), Expect = 0.092
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 215 HLASLVRLNATSERLLFWNKKY 150
           HLAS++RL  T  ++ F N +Y
Sbjct: 72  HLASIIRLTPTQVKIWFQNHRY 93


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 122 LGNSSVAILDISCSKITNVQKLHLNELKRL 211
           L  ++   LD+S +K TN++K +LN  ++L
Sbjct: 302 LSKNNDQCLDLSKTKETNLEKSNLNHNEQL 331


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 122 LGNSSVAILDISCSKITNVQKLHLNELKRL 211
           L  ++   LD+S +K TN++K +LN  ++L
Sbjct: 194 LSKNNDQCLDLSKTKETNLEKSNLNHNEQL 223


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 230 CTISNHLASLVRL 192
           CT+ +HL+ L+RL
Sbjct: 855 CTLHHHLSKLIRL 867


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,302
Number of Sequences: 336
Number of extensions: 1672
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)