Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H02f
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   1.5  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   1.9  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   2.6  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   2.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   3.4  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   3.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   3.4  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   5.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    24   7.8  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    24   7.8  
SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual    24   7.8  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.8  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +2

Query: 146 LDIS-CSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGA 262
           LD+     +T  +K +L +L+R  +LK YKNN+I+  + A
Sbjct: 76  LDVEWVESVTFHRKQNLEQLRR--ELKAYKNNLIRESIRA 113


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = +2

Query: 146 LDISCSKITNVQKL--HLNELKRLDDLKLYKNNIIKLE-VGAFSDLKSMRFLDWSXXKIS 316
           +D   S+++ V+K   HL++ + L  +K  K+ ++ +  +    D++S  FLDWS  +++
Sbjct: 63  IDSLLSRVSTVKKKMKHLHDCEALF-IKQTKSRLLFMNRLQGIRDMESADFLDWSRVRLN 121


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 32  TGLSANIVKSSMYLNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKL 187
           +G ++   ++ +  N +++ G +P     GLGN     LDI+ + I N+ KL
Sbjct: 254 SGNTSATFRTVLLANNVVLLGNKP-----GLGNVGGGALDITDADIRNINKL 300


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 194 NELKRLDDLKLYKNNIIKLE 253
           N LKR+ DLK    NII+LE
Sbjct: 133 NTLKRIKDLKSKPKNIIQLE 152


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +2

Query: 38  LSANIVKSSMYLNKLIISG--LEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRL 211
           ++AN  + S+ +N   I+      N S + L   S   LDI CSKI  VQ  +     R+
Sbjct: 363 VNANHKRQSIQVNHFDITSDACMLNFSHV-LSRLSEPFLDIGCSKIDRVQVEYFRRNPRV 421

Query: 212 D 214
           D
Sbjct: 422 D 422


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 40  FCEYCKIIHVFKQTDYLGXGT*YIINWPRKLVCSYSR--YFLFQNNKRS 180
           FC     I +     YL       +NWPR ++ +Y++  +F F+N+ R+
Sbjct: 545 FCRLLYSIPMVNAGIYLYFHRRQYVNWPRLVLPTYAKGGWFSFRNHFRN 593


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 349  DVILEYPRLDVRNFVXAPIEKSHRFQIRKRSDFQFNYI 236
            D ++   +L +++F+   +   H   ++K   F FN+I
Sbjct: 3709 DELIRRYKLSIKSFLSVVVVFQHFISLKKSYSFSFNFI 3746


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 95  LEPNISLIGLGNSSVAILDISCSKITN 175
           LE N  L+G GN ++ + DI  S+ T+
Sbjct: 283 LETNRLLVGKGNGNIFVYDIIWSESTS 309


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 328 RLDVRNFVXAPIEKSHRFQIRKRSDFQFNYIIFVQFQI 215
           RL++ + V +   K H    RK+  F + Y  +++F +
Sbjct: 430 RLELLHDVLSCFPKKHDSTSRKKPKFPYQYFPYMKFSV 467


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 107 ISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEV 256
           +S++   N+    +  S SK+TN +  ++ E   L  L+ Y NN++   V
Sbjct: 790 LSVLDACNNGTKYVVNSTSKLTNEEINNVFESYDLKRLESYSNNLLDYHV 839


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 152 ISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKS 280
           I C K +N   L   E  + D  K+   N + L + A  DLKS
Sbjct: 98  IVCDKSSNSMHLKFYEQLKDDMEKIGWKNFVVLNLKAHRDLKS 140


>SPCC1393.09c |||RWD domain|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 152 ISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLE 253
           +S +  +N +K  L   KR+   +L++NN++KL+
Sbjct: 178 LSAASSSNARKAILE--KRMTGRELFENNLVKLD 209


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 142 YSRYFLFQNNKRSEVAFK 195
           YSRY+LF  + R E A K
Sbjct: 136 YSRYYLFHGDPREEKAQK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,239
Number of Sequences: 5004
Number of extensions: 26990
Number of successful extensions: 83
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)