Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304H02f
(405 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19) 37 0.007
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 35 0.029
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 33 0.067
SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23) 33 0.089
SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25) 32 0.20
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.62
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06) 30 0.62
SB_36392| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.82
SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0) 29 1.1
SB_48677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.4
SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13) 28 2.5
SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.4
SB_48671| Best HMM Match : efhand (HMM E-Value=0.076) 27 7.7
>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 825
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2
Query: 125 GNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSX 304
G + + L++ ++++++Q L L L L N I + G+FSDL+S+ LD S
Sbjct: 130 GQNKLQQLNLERNRLSHIQDTTFKHLLALKVLNLANNRIYHISQGSFSDLRSLEGLDLSN 189
Query: 305 XKISY 319
IS+
Sbjct: 190 NDISW 194
Score = 35.1 bits (77), Expect = 0.022
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQ 325
LD+S + T++ N L L+ LKL KN I + GAF ++ L+ ++S+IQ
Sbjct: 90 LDLSRNFFTSILASAFNRLSSLEVLKLSKNRISTIR-GAFWGQNKLQQLNLERNRLSHIQ 148
Query: 326 PGVFK 340
FK
Sbjct: 149 DTTFK 153
>SB_22441| Best HMM Match : LRR_1 (HMM E-Value=1.8e-19)
Length = 261
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQ 325
L + +K+ + + L L+ L L+L KN I +L GAF L + L+ + +I +I
Sbjct: 113 LYLGYNKLERITRGTLEGLRDLQRLRLSKNTITRLYKGAFESLHMLTVLELADNEIEFID 172
Query: 326 PGVF 337
G F
Sbjct: 173 VGAF 176
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 34.7 bits (76), Expect = 0.029
Identities = 31/103 (30%), Positives = 46/103 (44%)
Frame = +2
Query: 35 GLSANIVKSSMYLNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLD 214
GLS++ K + NKLI S L P L + ++ +LD+ ++I + LN L
Sbjct: 614 GLSSSY-KVMLRNNKLIQSPLIP------LAHLNLVVLDLQFNQIPTINVGELNVFTGLR 666
Query: 215 DLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQPGVFKD 343
DL L NNI +L F + L+ I + G F D
Sbjct: 667 DLFLQNNNITELGKDLFKYNTVLGTLNIDNNAIQVVHEGAFND 709
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 33.5 bits (73), Expect = 0.067
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +2
Query: 116 IGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLD 295
+ +GN+++ + C T L+ K L DL + ++ + L+ +F D + +++LD
Sbjct: 42 LDIGNTTIVLTKAICFGATTDIPKGLS--KNLGDLTVSRSPLKLLKNTSFQDYQYLKWLD 99
Query: 296 WSXXKISYIQPGVFKD 343
S IS IQ G F++
Sbjct: 100 LSNNDISDIQDGTFEN 115
Score = 30.7 bits (66), Expect = 0.47
Identities = 24/98 (24%), Positives = 48/98 (48%)
Frame = +2
Query: 47 NIVKSSMYLNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKL 226
+I +++ L K I G +I GL + ++ L +S S + ++ + + L L L
Sbjct: 43 DIGNTTIVLTKAICFGATTDIPK-GL-SKNLGDLTVSRSPLKLLKNTSFQDYQYLKWLDL 100
Query: 227 YKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQPGVFK 340
N+I ++ G F +L+ ++ L+ KI + +FK
Sbjct: 101 SNNDISDIQDGTFENLRYLKQLNLGENKIRTVSASMFK 138
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFL 292
LD+S + I+ V +L L L+ N I + AFS LK +R L
Sbjct: 268 LDLSANLISYVSSTAFANNSKLQKLLLHNNTIRLIHEDAFSQLKGLRAL 316
Score = 27.5 bits (58), Expect = 4.4
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMR--FLDWSXXKISY 319
L++ +KI V L L+ L L N++ L G F LKS+R FL + S
Sbjct: 122 LNLGENKIRTVSASMFKGLVSLEKLDLRFNDLKALPRGVFKPLKSLRELFLHDNRNMGSR 181
Query: 320 IQPGVF 337
I+ G F
Sbjct: 182 IEEGAF 187
Score = 27.1 bits (57), Expect = 5.8
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 125 GNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNII--KLEVGAFSDLKSMRFLDW 298
G S+ LD+ + + + + LK L +L L+ N + ++E GAF+ L ++R L
Sbjct: 139 GLVSLEKLDLRFNDLKALPRGVFKPLKSLRELFLHDNRNMGSRIEEGAFNGLDNLRKLHV 198
Query: 299 SXXKISYIQPGVF 337
S + I G F
Sbjct: 199 SATGMKKITQGTF 211
>SB_11265| Best HMM Match : LRR_1 (HMM E-Value=0.23)
Length = 174
Score = 33.1 bits (72), Expect = 0.089
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQ 325
LD+ + ITNV + + L L+L N I +E GAF+ +R L KI+
Sbjct: 44 LDLGYNAITNVTAADMKGKEMLISLQLNDNRISYIETGAFNACIELRSLLLGQNKITKFS 103
Query: 326 PGV 334
P +
Sbjct: 104 PDI 106
>SB_55784| Best HMM Match : CUB (HMM E-Value=3.1e-25)
Length = 418
Score = 31.9 bits (69), Expect = 0.20
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 149 DISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFL 292
D+S + ITN+ + LD L +N + KLE GAF L ++ L
Sbjct: 254 DLSFNIITNLNARAFTNVTSLDTFDLSRNLLTKLENGAFDGLTNLNVL 301
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 30.7 bits (66), Expect = 0.47
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +2
Query: 125 GNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSX 304
G S+ L ++ + +T ++ L+ L+ L L NNI +L+ F+ S++ L S
Sbjct: 186 GTLSLKSLQLNNNLLTRIEPGTFRNLRGLEILYLNNNNITELDQRLFTRTPSLKLLFVSF 245
Query: 305 XKISYIQPGVF 337
++ + G+F
Sbjct: 246 NSLATLPRGLF 256
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 218 LKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQPGVFKD 343
L LY N I + AF +L ++R L+ ++S + VF+D
Sbjct: 73 LSLYNNLISTIHSNAFRNLTALRSLNLGANRLSVLPRSVFRD 114
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 125 GNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSX 304
G SS+ L + +++ + + + L L L+L+ NN+ S++ L +
Sbjct: 138 GLSSLQDLFLDFNRLRAIPETTFHGLAALQRLRLHNNNLKTFSERTLQGTLSLKSLQLNN 197
Query: 305 XKISYIQPGVFKD 343
++ I+PG F++
Sbjct: 198 NLLTRIEPGTFRN 210
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.3 bits (65), Expect = 0.62
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 215 DLKLY-KNNIIKLEVGAFSDLKSMRFLDWSXXKISYIQPGVFK 340
D+ L+ KN+I L+ FS L+ +++LD S KI + FK
Sbjct: 1667 DVSLFAKNDINDLKATDFSGLREIKYLDLSWNKILRVDKNAFK 1709
>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
Length = 298
Score = 30.3 bits (65), Expect = 0.62
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 140 AILDISCSKITNVQKL-HLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMRFLDWSXXKIS 316
A+ D+ ++I N+ L L+RL L L N + + G F DLKS++ +I
Sbjct: 123 AVPDLHDNRINNLSNCASLKGLRRLTILYLSNNFLDSIPGGCFLDLKSLKHFFVGDNQIK 182
Query: 317 YIQPGVFKD 343
+ VF++
Sbjct: 183 KVADDVFQN 191
>SB_36392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 29.9 bits (64), Expect = 0.82
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLEVGAFSDLKSMR 286
LD+ + ITNV + + L DL+L N I +E GAF+ +R
Sbjct: 52 LDLGYNAITNVTAADMKGKEMLFDLQLNDNRISYIEGGAFNACIELR 98
>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
Length = 739
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -1
Query: 174 FVILEQEISRIATDEFPRPINDILG 100
+VI + E +R+ TD +PRP+N I G
Sbjct: 134 YVIEDTEEARVNTDRYPRPLNVIEG 158
>SB_48677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 62 SMYLNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYK--N 235
S YL+ + + EP +++ G+G S + + + H +K + DL LY+ +
Sbjct: 479 SFYLD-VFVRNCEPKLTVTGVGGDSEDLEKALMTSVMRSSATHRENVKGMRDLILYRYDS 537
Query: 236 NI---IKLEVGAFSDLK 277
N+ I +E +++D+K
Sbjct: 538 NVRTTIMIENQSYTDVK 554
>SB_4797| Best HMM Match : LRR_1 (HMM E-Value=6.7e-13)
Length = 335
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 146 LDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKLE 253
LD+S + I ++ L ++L +L DL LY N I K+E
Sbjct: 92 LDLSFNNIEVIEGL--DKLTKLKDLTLYNNRITKIE 125
>SB_4978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.5 bits (58), Expect = 4.4
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 71 LNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYKNNIIKL 250
+N L++ L+ N SLI L +SV +LD + + +V KL + ++ L + L N+++ L
Sbjct: 23 VNSLVV--LDVN-SLIVLDANSVVVLDANSVVVLDVNKLVVLDVNSL--VVLDVNSVVVL 77
Query: 251 EVGAF--SDLKSMRFLD 295
+V + D+ S+ LD
Sbjct: 78 DVNSLVVLDVNSLVVLD 94
>SB_216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 155 SCSKITN--VQKLHLNELKRLDDLKLYKNNIIKL 250
S SK+TN + L N+ KR++ L +Y NI+++
Sbjct: 232 SLSKLTNGHIMNLISNDAKRMERLVMYTMNIVRM 265
>SB_48671| Best HMM Match : efhand (HMM E-Value=0.076)
Length = 213
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 62 SMYLNKLIISGLEPNISLIGLGNSSVAILDISCSKITNVQKLHLNELKRLDDLKLYK 232
S YL+ + + EP +++ G+G S + + + H +K + DL LY+
Sbjct: 144 SFYLD-VFVRNCEPKLTVTGVGGDSEDLEKPLMTSVMRSSATHRENVKGMRDLILYR 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,483,410
Number of Sequences: 59808
Number of extensions: 178231
Number of successful extensions: 407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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