Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    27   2.2  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   3.9  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   6.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   6.8  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    25   9.0  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.0  

>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 394 KSVKKADFFNE*NISTMPVCDFY 462
           K  ++ DF +E N+  MP C FY
Sbjct: 63  KKGEQCDFLHEYNLKKMPPCHFY 85


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 74  SNRKKKDIPKQINIYTKN 127
           S RKKKD+PK  N+   N
Sbjct: 123 SGRKKKDVPKSRNVSRSN 140


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 302 ESSKSIHPDKSY-EVTNIKKTYSRIENLLLF*SRLKRQIFSMNETSQLCLYVIFTYY 469
           ESS+ I PDKS+ EV +I  T  R    LL    +   I  +  T    LY++FT +
Sbjct: 251 ESSQQIDPDKSFAEVVHILVTTIRRPLHLLCTQPIMILISLIVGTVYGILYLLFTAF 307


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 352 KKNIQSN*EPPPFLKSVKKADFFN 423
           K N+  N +PP F K+  K   FN
Sbjct: 425 KANVSENNDPPTFPKTAAKISSFN 448


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = -2

Query: 376 LNSTVCFFYVCYLIT--FVWV 320
           +N  VC F+V +L+T  F WV
Sbjct: 39  INDKVCHFFVFFLLTLVFYWV 59


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 302 ESSKSIHPDKSYEVTNIKKTYSRIENLLLF 391
           E S  IH D +  VTN   TY  ++   LF
Sbjct: 657 EISVQIHVDTNLYVTNFPPTYDELDITKLF 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,887
Number of Sequences: 5004
Number of extensions: 39844
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)