Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0238 + 21186072-21186883,21187315-21189346                       29   3.0  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    28   5.2  
01_05_0175 - 18936752-18937621,18938855-18941641                       27   6.9  

>02_04_0238 + 21186072-21186883,21187315-21189346
          Length = 947

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 365 CMFFLCLLPHNFCLGESILKILFLLES*RFP 273
           CM +LCL P ++ + + IL   ++ E   FP
Sbjct: 425 CMLYLCLFPEDYIISKDILVQQWIAEGFVFP 455


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = +2

Query: 206 FILIWFSHGYHYQNWTKLKWDHTGSVSFLIKKESSKSIHPDKSYEVTNIKKTYSRIENLL 385
           F++ W S  +H+  W  L+W H  S    ++   +K+  P + Y     K  +  +++ +
Sbjct: 387 FLVKWQSLSHHHDCWVPLEWLHV-SDPLRVQSYLNKNCLPKEVYSEDQRKLEWFEVDHAI 445


>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 217  LVFSWIPLSELD*IEMGSHGKRQLSNKKRIFKI 315
            L F+WIP+  L  I++  HGK ++  +K + ++
Sbjct: 1178 LSFAWIPVDYLARIKLRCHGKVRVEGQKPVERL 1210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,379,372
Number of Sequences: 37544
Number of extensions: 200844
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)