Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 27   9.4  

>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 326 DKSYEVTNIKKTYSRIENLLLF*SRLKR-QIFSMNETSQLCLYVIFTYY 469
           D + E  NIKK Y+R+  LL   +RL    I   ++T+ + L +  +YY
Sbjct: 374 DLALEFDNIKKFYTRLAGLLTISNRLAHVGIVRYSDTADMILPLDESYY 422


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 257 LKWDHTGSVSFLIKKESSKSIHPDKS-YEVTNIKKTYSRIENLLLF*SRLKRQIF-SMNE 430
           L+W  +GS++F+++ +S  ++    S Y+   +K+ +      +     +K  +F   NE
Sbjct: 353 LQWVQSGSITFIVRAQSLAALKELWSMYQTGELKRRFQEAFAKISDGQEIKFSVFIDENE 412

Query: 431 TSQLCLYVI 457
              +CL ++
Sbjct: 413 YRSICLNLV 421


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 200  ASSTSATNR*ITQLNITPTDFDDYCF 123
            AS  ++T R  T+L  TPT   DYC+
Sbjct: 1310 ASEPASTLRRSTRLKTTPTHLKDYCW 1335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,243
Number of Sequences: 59808
Number of extensions: 250385
Number of successful extensions: 534
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)