Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022969-6|AAB69890.1|  136|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical p...    27   8.1  

>AF022969-6|AAB69890.1|  136|Caenorhabditis elegans Hypothetical
           protein C29G2.1 protein.
          Length = 136

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 233 YHYQNWTKLKWDHTGSVSFLIKKESSKSIH 322
           Y Y+NW + K +++G+  F+ +  SSK IH
Sbjct: 58  YEYENWFEEKRENSGT-KFIKRSSSSKEIH 86


>Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical
           protein C51E3.1 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 455 SHTGIVEMFHSLKKSAFLTDFKKG-GGSQFDCMFFLCLLPHNFCLGESIL 309
           S T +++ FH   +  FL ++  G   SQ +C F L L    +C G  ++
Sbjct: 49  SLTCLIDAFHISGQFPFLIEYFTGITSSQSECYFILILPIVGYCAGGPLI 98


>Z75955-12|CAB00115.2|  485|Caenorhabditis elegans Hypothetical
           protein R07B7.6 protein.
          Length = 485

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 212 LIWFSHGYHYQNWTKLKWDHTGSVSFLIK 298
           ++ F HG+ Y+  TK KW   G   F I+
Sbjct: 271 IMGFDHGFSYRYNTKAKWTPAGMKLFKIE 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,854
Number of Sequences: 27780
Number of extensions: 215615
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)