Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47690.1 68418.m05887 expressed protein                             28   4.4  
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu...    27   7.7  
At3g23340.1 68416.m02944 casein kinase, putative similar to case...    27   7.7  

>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 443  IVEMFHSLKKSAFLTDFKKGGGSQFDCMFFLCLLPH 336
            I+ +FHS+K+S  +TD  K   S   C   L ++ H
Sbjct: 1027 IILIFHSIKQSEDVTDATKSKNSHAICELGLSIINH 1062


>At4g19450.1 68417.m02861 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 572

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 397 TSKKEEVLNSTVCFFYVCYLITFVW 323
           T  K     S VC    CY +TFVW
Sbjct: 510 TGTKSMTSESVVCMGRDCYYLTFVW 534


>At3g23340.1 68416.m02944 casein kinase, putative similar to casein
           kinase I [Arabidopsis thaliana] gi|1197461|emb|CAA55396
          Length = 442

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 191 YLMQIFILIWFSHGYHYQ---NWTKLKWDHTGSVS 286
           YL ++F  ++   GY +    +WT LK+  +GS+S
Sbjct: 268 YLKRLFRDLFIREGYQFDYVFDWTILKYPQSGSIS 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,001
Number of Sequences: 28952
Number of extensions: 186510
Number of successful extensions: 468
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)