Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    40   1e-05
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 36/63 (57%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQME 509
           TL+I +IQ+ + G+Y C+ +  I + ++A +++ V+ PP   D   R+  +  G    ++
Sbjct: 759 TLTINNIQKTNEGYYLCEAVNGIGSGLSAVIQISVQAPPQF-DIKLRNQTSRRGDPAVLQ 817

Query: 510 CYA 518
           C A
Sbjct: 818 CEA 820



 Score = 26.2 bits (55), Expect = 0.18
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 330  TLSIRDIQENDAGWYQCQV 386
            +L IRD+  N+AG Y C V
Sbjct: 1360 SLFIRDVSRNNAGEYSCHV 1378



 Score = 24.2 bits (50), Expect = 0.71
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRP 443
           TL IR+ +  D+G Y C V  S+  + + E  L V  P
Sbjct: 291 TLIIREAKVEDSGKYLCVVNNSVGGE-SVETVLTVTAP 327



 Score = 23.8 bits (49), Expect = 0.94
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 333 LSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQMEC 512
           L+I  I  ND G Y+C V  S          + V   P +     ++IVA  G ++ + C
Sbjct: 476 LNITAIHTNDGGLYRC-VASSKVGSADHSARINVYGLPFVRSMEKQAIVA--GGTLIVHC 532

Query: 513 -YAG 521
            +AG
Sbjct: 533 PFAG 536



 Score = 21.4 bits (43), Expect = 5.0
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = +3

Query: 330 TLSIRDIQENDAGWYQCQVLMSISNKIAAEVELQVRRPPIISDNSTRSIVASEGXSVQME 509
           TLSI ++Q    G Y C    S S        L +  PP      T    A +G    +E
Sbjct: 662 TLSIDNVQSTHVGNYTCLASNSAS-VTTYTTSLFINVPPRWILEPTDKAFA-QGSDAAVE 719

Query: 510 CYA 518
           C A
Sbjct: 720 CKA 722


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 52  IFTFFTLYYCISLVM 96
           IFT   L+YC+ +++
Sbjct: 221 IFTIHLLFYCVLIIL 235


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 304 ATTRQRPHLRSPSGIFKRTT 363
           ++T   P  RSP  +FK  T
Sbjct: 286 SSTSSSPEPRSPESLFKPVT 305


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,315
Number of Sequences: 336
Number of extensions: 3230
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)