Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS304G12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    27   1.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   1.3  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   2.2  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   5.2  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   5.2  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   6.8  
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    25   6.8  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    25   6.8  

>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 308 VAQREPRVLDDEPGVGRQGYRFDRLQTIAF 219
           +++ +   L D+PG+GR+  RF  L+ + F
Sbjct: 185 ISETKMSALCDDPGIGRKSQRFIELEKMLF 214


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +3

Query: 138  EQIRDIGGQVDLECSVHYAQEFPVVWTKRDRLKTIESIPLSTNAGLIIKDSRFSLRHDEA 317
            EQ+ D+  ++ L+  ++ +Q FP+   K D L+    +    NA L+ +    +L   E 
Sbjct: 1088 EQVEDLNKEIALKAGINESQPFPIS-EKEDPLRQEVYVLKKQNAMLLTQLQSSNLNFAEI 1146

Query: 318  TA 323
            T+
Sbjct: 1147 TS 1148


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 461 IVRYDGGPPDLELHFSGDLVAYGHQHLALV 372
           +  Y G PPD    F GD V  G Q L ++
Sbjct: 71  LFEYGGYPPDANYLFLGDYVDRGKQSLEVI 100


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 433 TWSSTSAAILLLMDISTWHWYQPASFS*ISLMESVNVAVASSW 305
           TWSST+  I L +D S  H       S +  + S    V  SW
Sbjct: 33  TWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRS---TVLDSW 72


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 225 DRLKTIESIPLSTNAGLIIKDSRFSLRHDE 314
           D+L   ES+PL+  +   I++ +F   H E
Sbjct: 307 DKLFNAESVPLALKSLTFIRNQKFPFHHKE 336


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 261 STGVSIRSSSNDRVWSRQQETLEHNARNIPGLPGLRY 151
           + G  + + S + ++ R     E N RN PG+P L Y
Sbjct: 599 TAGSVLETESEEDLYFRDYSLFEIN-RNTPGVPSLMY 634


>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 299 AAPRRGNGHIYALHQGYSRERRRLVPVPSADVHKQQD 409
           A  R G    YA    +  E    VP+P  +VHK+++
Sbjct: 200 AVKRVGRSDAYATE--FDLEAEEYVPMPKGEVHKRKE 234


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 461 IVRYDGGPPDLELHFSGDLVAYGHQHLALV 372
           +  Y G PP+    F GD V  G Q L ++
Sbjct: 74  LFEYGGFPPEANYLFLGDYVDRGKQSLEVI 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,626
Number of Sequences: 5004
Number of extensions: 51175
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)