Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS304G12f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239 30 1.3
11_01_0752 - 6327269-6327764,6328571-6328839 29 2.3
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 29 2.3
08_02_1238 + 25486263-25487574,25488210-25489117 28 4.0
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 4.0
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 28 5.2
08_01_0024 + 180749-180872,181826-181880,181936-182025,182075-18... 28 5.2
06_01_0215 - 1635854-1636780,1638013-1638081 28 5.2
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 28 5.2
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187... 28 5.2
03_06_0625 - 35166736-35168166 28 5.2
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 5.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 6.9
06_01_0085 - 678144-678335,678466-678639,678721-678912,679756-67... 27 6.9
04_03_0713 - 18977806-18978228 27 6.9
12_02_1171 - 26669487-26669854,26670769-26670868,26670970-266711... 27 9.1
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 27 9.1
03_05_0769 - 27579251-27579934 27 9.1
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 27 9.1
01_06_0252 + 27889652-27892450 27 9.1
>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
Length = 569
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 114 PTISHITQEQIRDIGGQVDLECSVHYAQEFPVVWTKRDRL 233
P I I+Q Q ++ +D+ ++ A+EF +W K+DRL
Sbjct: 401 PFIERISQ-QTENLNWLLDILVNIDMAEEFVELWAKQDRL 439
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 259 RPTPGSSSRTLGSRCATTRQRPHLRSP--SGIFKRTTPAGTSAKC*CP*ATRSPLKWSSR 432
+P+P +S T G +TTR+ +SP SG ++P+ + A CP RSP
Sbjct: 41 KPSPRTSKPTEGE--STTRRCRPTQSPSTSGAPAASSPSFSPASPSCPAKLRSP---PPT 95
Query: 433 SGGPPSYRTIPP 468
SG P + PP
Sbjct: 96 SGEPSAVHASPP 107
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 263 QRRAHHQGL*VLAAPRRGNGHIYALHQGYSRERRRLVPVPSADVHKQQDRR*SGAP-GQE 439
+R+++HQG APR G HQ ++ R+ P +++ + AP G
Sbjct: 485 KRKSNHQGNSSRGAPRPRYGQPMQYHQSLTQANRQPGYAPRPQINRPAPQPQKHAPSGNT 544
Query: 440 APHHIGQF 463
AP+ + F
Sbjct: 545 APNSVTSF 552
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 213 RQQETLEHNARNIPGLP 163
R+QE LEH N+PG+P
Sbjct: 334 RRQERLEHTLTNLPGMP 350
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 29 CNVQNGSKYLRFLHFTIVFHL 91
C++ N S FLHFTIV HL
Sbjct: 101 CHLANNSANCYFLHFTIVQHL 121
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 308 RRGNGHIYALHQGYSRERRRLVPVPSADVHKQQD 409
R+ N HI ++ +G SR + L P P H Q D
Sbjct: 417 RQSNDHIVSIIRGESRNQPPLGPQPQPASHSQPD 450
>08_01_0024 +
180749-180872,181826-181880,181936-182025,182075-182426,
182913-183000,183162-183294,183394-184089,184305-184368,
184489-184578
Length = 563
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -3
Query: 270 RRWSTGVSIRSSSNDRVWSRQQETLEHNARNIPGLPG 160
R WS G+SI D S + + E +PGL G
Sbjct: 83 RSWSRGISIVRDVRDSFGSLSRRSFEVRISGLPGLSG 119
>06_01_0215 - 1635854-1636780,1638013-1638081
Length = 331
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 241 SNRYPCRPTPGSSSRTLGSRCATTRQRPHLRSPSGIFKRT-TPAG 372
S YP PGS+ + + +++ P L+ PSG+ ++T P+G
Sbjct: 154 SEAYPISTAPGSAGKAKRPKKNSSQASP-LKRPSGVLRKTKKPSG 197
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 253 PCRPTPGSSSRTLGSRCATTRQRPHLRSPSGIFKRTTPAGT 375
P P+ S++ G A R+R H PS I T+P+ T
Sbjct: 131 PAPPSSSSAAAAPGRSPARERERDHGHHPSDISDPTSPSST 171
>04_01_0168 -
1874297-1874645,1874968-1875137,1875688-1875807,
1876750-1876812
Length = 233
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 430 WSSTSAAILLLMDISTWHWYQPAS 359
WSSTS A LL+ + WYQ S
Sbjct: 41 WSSTSGAATLLLPLLQQSWYQENS 64
>03_06_0625 - 35166736-35168166
Length = 476
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 430 WSSTSAAILLLMDISTWHWYQPASFS*ISLMESVNVAVA 314
W+ST AI+ + + W Y + + + ++E + VAVA
Sbjct: 358 WNSTLEAIMSALPMICWPLYAEQAMNRVLMVEEMKVAVA 396
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 5.2
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Frame = +1
Query: 253 PCRPTPGSSSRTLGSRCATTRQRPHLR-SPSGIFKRTTPAG--TSAKC*CP*ATRSPLKW 423
P P+ GSS T G T SPS RTTP G T C P A S
Sbjct: 261 PPSPSSGSSPTTPGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSP 320
Query: 424 SSRSGG----PPSYRTIPPGQSS 480
++ G PS +PP SS
Sbjct: 321 TTPGGSYYPPTPSIGDVPPSPSS 343
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 6.9
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 238 RSNRYPCRPTPGSSSRTLGSRCATTRQRPHLRSPSG-IFKRTTPAGTSAKC*CP*ATRSP 414
R+ P R + GSS+ R + + P SPS RT P+ +++ P A + P
Sbjct: 126 RTKSKPIRIS-GSSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQPP 184
Query: 415 LKWSSRSGGPPSYRTIPPGQSS 480
S R PPS +T+ P + S
Sbjct: 185 TP-SWRPSTPPSAKTLTPPRRS 205
>06_01_0085 -
678144-678335,678466-678639,678721-678912,679756-679911,
680091-680158,680878-681127
Length = 343
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 499 TLXPSLATIDLVELSDMMGGLLTWSSTS 416
T P + I +SD+ GG TWSSTS
Sbjct: 282 TTSPGIPVIVFRGVSDLAGGEPTWSSTS 309
>04_03_0713 - 18977806-18978228
Length = 140
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 458 VRYDGGPPDLELHFSGDL 405
VR+DG PPD+E +GDL
Sbjct: 118 VRWDGSPPDVEDLVAGDL 135
>12_02_1171 -
26669487-26669854,26670769-26670868,26670970-26671161,
26672475-26672537,26673197-26673347,26673614-26673711,
26673936-26674136
Length = 390
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +3
Query: 252 PLSTNAGLIIKDSRFSLRHDEATATFTLSIRDIQENDAGW-----YQ-CQVLMSISNKIA 413
P S + I++D F L + IR I GW YQ C +++ ISN I
Sbjct: 177 PFSPDIEQILRDRAF-LTQSPVISACDPGIRSITRC-IGWDCGKPYQSCDIVIEISNDIP 234
Query: 414 AEVELQVRRPPIISDNSTRSIVAS 485
+ELQ + ++ D+ ++ V +
Sbjct: 235 LFIELQDLKLQLLGDHQRQNAVTA 258
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 298 RCATTRQRPHLRSPSGIFKRTTPAGTSAKC*CP*ATR--SPLKWSSRSGGPPSYRT 459
R + R H RSPSG R+ A TS + S L SRS PP+Y T
Sbjct: 1214 RASLNLSRAHSRSPSGSRSRSPHAWTSPRNRREVMVNGSSSLWRHSRSRSPPNYMT 1269
>03_05_0769 - 27579251-27579934
Length = 227
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 244 NRYPCRPTPGSSSRTL-GSRCAT 309
N YPC+PTP + L SR AT
Sbjct: 47 NGYPCKPTPAAGDEFLFSSRLAT 69
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 428 PGQEAPHHIGQFHQVNRR*RRXKCSNGMLR 517
PGQE H HQ+N R KC+ G L+
Sbjct: 434 PGQETQLHRNSKHQINIH-NRDKCNGGPLQ 462
>01_06_0252 + 27889652-27892450
Length = 932
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 174 ECSVHYAQEFPVVWTKRDRLKT 239
EC + + FP VWT RDR T
Sbjct: 370 ECGIGMSFWFPAVWTVRDRSVT 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,504
Number of Sequences: 37544
Number of extensions: 398442
Number of successful extensions: 1223
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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